View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19476_low_12 (Length: 385)
Name: NF19476_low_12
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_12 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 26802526 - 26802897
Alignment:
| Q |
1 |
tcatcaacaacaaagactatcagtaatgaaattgaaaaggaacacaacaatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagaaaaaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
26802526 |
tcatcaacaacaaagaccatcagtagtgaaattgaaaagaaacgcaacaatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagagagaag |
26802625 |
T |
|
| Q |
101 |
attgtgaggcttccaaaaagtgtggtttgtataaaaggaaaccgcaaaaattgcagcaaaaagtgcggttgtataaaaagattgtgatgtttccagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26802626 |
attgtgaggcttccaaaaagtgtggtttgtataaaagggaaccgcaaaaattgcagcaaaaagtgcggctgtataaaaagattgtgatgtttccagaaat |
26802725 |
T |
|
| Q |
201 |
tgaaattgaaaatgaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaatgcggcctccatagctttgatctacagacacacat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |
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| T |
26802726 |
tgaaattgaaaatgaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaacgcggcctccatagccttgatctacggacacacat |
26802825 |
T |
|
| Q |
301 |
aaccagcgtt--gagagagaggagaggataatgagttagatttgattatgggcatttgtgatggtattgatt |
370 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26802826 |
aaccagcgttgagagagagaggagaggataatgagttagatttgattatgggcatttgtgatggtattgatt |
26802897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 40109957 - 40110326
Alignment:
| Q |
1 |
tcatcaacaacaaagactatcagtaatgaaattgaaaaggaacacaacaatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagaaaaaag |
100 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
40109957 |
tcatcaacaacaaaaaccatcagtagtgaaattgaaaaggaacgcatcaatcgaatcaagaccatcaatagtgaaaccttcacaagaagtaagagagaag |
40110056 |
T |
|
| Q |
101 |
attgtgaggcttccaaaaagtgtggtttgtataaaaggaaaccgcaaaaattgcagcaaaaagtgcggttgtataaaaagattgtgatgtttccagaaat |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40110057 |
attgtgaggtttccaaaaagtgtggtttgtataaaagggaactgcaaaaattgcagcaaaaagtgcagttgtataaaaagattgtgatgtttccagaaat |
40110156 |
T |
|
| Q |
201 |
tgaaattgaaaatgaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaatgcggcctccatagctttgatctacagacacacat |
300 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| || ||||||||| |
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|
| T |
40110157 |
tgaaattgaaaaggaatgcaatggaaactttttggatttcatttaatctcttccaaacacggaaacgcagcctccatagttttgatccacggacacacat |
40110256 |
T |
|
| Q |
301 |
aaccagcgttgagagagaggagaggataatgagttagatttgattatgggcatttgtgatggtattgatt |
370 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40110257 |
aaccaacgttgagagagaggagaggataaggagttagatttgattatgggcatttgtgatggtattgatt |
40110326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 24517135 - 24516768
Alignment:
| Q |
1 |
tcatcaacaacaaagactatcagtaatgaaattgaaaaggaacacaacaatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagaaaaaag |
100 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
24517135 |
tcatcaacaacaaaaaccatcagtagtgaaattgaaaaggaacgcagcaatcgaatcaagaccatcaatagtgaaaccttcacaagaagtaagagagaag |
24517036 |
T |
|
| Q |
101 |
attgtgaggcttccaaaaagtgtggtttgtataaaaggaaaccgcaaaaattgcagcaaaaagtgcggttgtataaaaagattgtgatgtttccagaaat |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
24517035 |
attgtgagatttccaaaaagtgtggtttgtataaaagggaaccgcaaaaattgcagcaaaaagtgcagttgtataaaaagattgtgatgttttcagaaat |
24516936 |
T |
|
| Q |
201 |
tgaaattgaaaatgaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaatgcggcctccatagctttgatctacagacacacat |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| || | |||||| |
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|
| T |
24516935 |
tgaaattgaaaaggaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaacgcagcctgcatagttttgatccacgg--acacat |
24516838 |
T |
|
| Q |
301 |
aaccagcgttgagagagaggagaggataatgagttagatttgattatgggcatttgtgatggtattgatt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
24516837 |
aaccagcgttgagagagaggagaggataaggagttagatttgattatgggcatttgtgattgtattgatt |
24516768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 39907061 - 39907108
Alignment:
| Q |
48 |
caatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagaa |
95 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||||| |||||| |
|
|
| T |
39907061 |
caatggaagcaagtccatcagtagtgaaaccttcacaagaaataagaa |
39907108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 39907183 - 39907238
Alignment:
| Q |
243 |
ttaatctcttccaaacacggaaatgcggcctccatagctttgatctacagacacac |
298 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||| || ||||||| |
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|
| T |
39907183 |
ttaatctcttccaaacacggaaacgcaaccgccatagctttgatccacggacacac |
39907238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 22620445 - 22620810
Alignment:
| Q |
1 |
tcatcaacaacaaagactatcagtaatgaaattgaaaaggaacacaacaatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagaaaaaag |
100 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
22620445 |
tcatcaacaacaaaaaccatcagtagtgaaattgaaaaggaacgcaacaatcgaatcaagaccatcaatagtgaaaccttcacaagaagtaagagagaag |
22620544 |
T |
|
| Q |
101 |
attgtgaggcttccaaaaagtgtggtttgtataaaaggaaaccgcaaaaattgcagcaaaaagtgcggttgtataaaaagattgtgatgtttccagaaat |
200 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22620545 |
attgttagttttccaaaaagtgtggtttgtataaaagggaaccgcaaaaattgcatcaaaaattgcagttgtataaaaagattgtgatgtttccagaaat |
22620644 |
T |
|
| Q |
201 |
tgaaattgaaaatgaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaatgcggcctccatagctttgatctacagacacacat |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||| || ||||||||| |
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|
| T |
22620645 |
tgaaattgaaaaggaacgcaatggaaactttttggatttcatttaatctgttccaaacacggaaacgcagcctccatagttttgatccacggacacacat |
22620744 |
T |
|
| Q |
301 |
aaccagcgttgagagagaggagaggataatgagttagatttgattatgggcatttgtgatggtatt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620745 |
aaccagcgttgagagagaggagaggataaggagttagatttgattatgggcatttgtgatggtatt |
22620810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 41349048 - 41348681
Alignment:
| Q |
1 |
tcatcaacaacaaagactatcagtaatgaaattgaaaaggaacacaacaatggaatcaagaccatcaatagtgaaaccttcacaagaagtaagaaaaaag |
100 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
41349048 |
tcatcaacaacaaaaaccatcagtagtgaaattgaaaaggaacgcagcaatcgaatcaagaccatcaatagtgaaaccttcacaagaagtaagagagaag |
41348949 |
T |
|
| Q |
101 |
attgtgaggcttccaaaaagtgtggtttgtataaaaggaaaccgcaaaaattgcagcaaaaagtgcggttgtataaaaagattgtgatgtttccagaaat |
200 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
41348948 |
attgttagttttccaaaaagtgtggtttgtataaaagggaaccgcaaaaattgcatcaaaaattgcagttgtataaaaagattgtgatgtttccagaaat |
41348849 |
T |
|
| Q |
201 |
tgaaattgaaaatgaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaatgcggcctccatagctttgatctacagacacacat |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| || ||||||||| |
|
|
| T |
41348848 |
tgaaattgaaaaggaacgcaatggaaactttttggatttcatttaatctcttccaaacacggaaacgcagcctccatagttttgatccacggacacacat |
41348749 |
T |
|
| Q |
301 |
aaccagcgttgagagagaggagaggataatgagttagatttgattatgggcatttgtgatggtattgatt |
370 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41348748 |
aaccaacgttgag--agaggagaggataaggagttagatttgattatgggcatttgtgatggtattgatt |
41348681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 10736222 - 10736272
Alignment:
| Q |
27 |
tgaaattgaaaaggaacacaacaatggaatcaagaccatcaatagtgaaac |
77 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
10736222 |
tgaaattaaaaaggaacacatcaatggaagcaagaccatcagtagtgaaac |
10736272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 7405 - 7358
Alignment:
| Q |
302 |
accagcgttgagagagag-gagaggataatgagttagatttgattatg |
348 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
7405 |
accagcgttgagagagagagagaggataaggagttagatctgattatg |
7358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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