View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19476_low_18 (Length: 249)
Name: NF19476_low_18
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 28730893 - 28731123
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
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| T |
28730893 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctcttcgtattttaccttcattgcaagggagaggatgctgaaaccgttattacgg |
28730992 |
T |
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| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
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| T |
28730993 |
agcctgagcgttgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggagtgtgaacatgagcactggaacggtgatcaggatgaa |
28731092 |
T |
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| Q |
201 |
acggaaaggagagtgaagtcattctctcaac |
231 |
Q |
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| T |
28731093 |
acggaaaggagagtgaagtcattctctcaac |
28731123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38608804 - 38608574
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
38608804 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacgg |
38608705 |
T |
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| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
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| T |
38608704 |
agcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaa |
38608605 |
T |
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| Q |
201 |
acggaaaggagagtgaagtcattctctcaac |
231 |
Q |
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| T |
38608604 |
acggaaaggagagtgaagtcattctctcaac |
38608574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38793587 - 38793357
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
38793587 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacgg |
38793488 |
T |
|
| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
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| T |
38793487 |
agcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaa |
38793388 |
T |
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| Q |
201 |
acggaaaggagagtgaagtcattctctcaac |
231 |
Q |
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| T |
38793387 |
acggaaaggagagtgaagtcattctctcaac |
38793357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38121319 - 38121549
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
38121319 |
aagatcatcaacagcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatagcaagggagaggatgctgaaaccgttattacgg |
38121418 |
T |
|
| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
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| T |
38121419 |
agccttaccattgcatctcgtagcatgaggcgcataatagcagggagcacggtggcgccgggagtgtgaacatgagcaccggaacggtgatcaggatgaa |
38121518 |
T |
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| Q |
201 |
acggaaaggagagtgaagtcattctctcaac |
231 |
Q |
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||||||||||||| ||| ||||||||||||| |
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| T |
38121519 |
acggaaaggagagagaactcattctctcaac |
38121549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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