View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19476_low_19 (Length: 231)
Name: NF19476_low_19
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 47332022 - 47332197
Alignment:
| Q |
16 |
acatatcatattcccattgcgagatccatactagcaataaggatgcatgtagaaatattaggagcgaatacggtgttatcaaaactaaattcaaattatg |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47332022 |
acatatcatatttccattgcgagatccatactagcaataaggatgcatatagaaatattaggagcgaatacggtgttatcaaaactaaattcaaattatg |
47332121 |
T |
|
| Q |
116 |
ataatgttttaaattaagaccatacttttatcatttccgtgttttggacgagttggtaatgtaatttttcgctagg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
47332122 |
ataatgttttaaattaagaccatacttttatcaattccgtgttttggacgagtaggtaatgtaatttttggctagg |
47332197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University