View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19476_low_3 (Length: 645)
Name: NF19476_low_3
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 13 - 635
Target Start/End: Complemental strand, 23344731 - 23344108
Alignment:
| Q |
13 |
catcatcacctgatcaatcttctagttgtcaatcctcacatttctcaaatagtaaccatggtgtggattcacatgcttccaacaaagagtctgaagaaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344731 |
catcatcacctgatcaatcttctagttgtcaatcctcacatttctcaaatagtaaccatggtgtggattcacatgcttccaacaaagagtctgaagaaga |
23344632 |
T |
|
| Q |
113 |
aaattaccaagtacaagaaattgaacaagggtactcaatggatgatatatggaaagatattgctatgtctgaagatgacatcaatgttcttcaacctgat |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344631 |
aaattaccaagtccaagaaattgaacaagggtactcaatggatgatatatggaaagatattgctatgtctgaagatgacatcaatgttcttcaacctgat |
23344532 |
T |
|
| Q |
213 |
tttgatggaactagtgaagagaatagtaataatttatcttgtcctataatgccttctacatcatcatgggattattcatatttagatccattgtgggtga |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344531 |
tttgatggaactagtgaagagaatagcaataatttatcttgtcctataatgccttctacatcatcatgggattattcatatttagatccattgtgggtga |
23344432 |
T |
|
| Q |
313 |
tggatgaagaagaaagcaagatgttattccctcctattggtgaacaatatttttccttctatgatcaacaagggaacacatttctaactggttaatcaag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344431 |
tggatgaagaagaaagcaagatgttattccctcctattggtgaccaatatttttccttctatgatcaacaagggaacacatttctaactggttaatcaag |
23344332 |
T |
|
| Q |
413 |
attattc-nnnnnnnncttcttcaatattttgttcatatgtgtgccatctgtcataagatagcctaattaacatgtatatagcatagtatatgtctttct |
511 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344331 |
attattctttttttttcttcttcaatattttgttcatatgtgtaccatctgtcataagatagcctaattaacatgtatatagcatagtatatgtctttct |
23344232 |
T |
|
| Q |
512 |
gaaagggatttgatgcagtaactgtttctgcagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaacttgattttgttattgtgta |
611 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344231 |
gaaagggatttgatgcggtaactgtttctgcagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaacttgattttgttattgtgta |
23344132 |
T |
|
| Q |
612 |
atctgaattatccgatctcaaatt |
635 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
23344131 |
atctgaattgtccgatctcaaatt |
23344108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 635
Target Start/End: Complemental strand, 10585750 - 10585701
Alignment:
| Q |
586 |
tttaaacttgattttgttattgtgtaatctgaattatccgatctcaaatt |
635 |
Q |
| |
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|||||| || |||||||||||||||||||||| ||||||||||||||| |
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| T |
10585750 |
tttaaattttattttgttattgtgtaatctgagccatccgatctcaaatt |
10585701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 580 - 635
Target Start/End: Original strand, 32614342 - 32614397
Alignment:
| Q |
580 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaatt |
635 |
Q |
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|||||||||||| ||||||||||||||||||||| ||| || |||||| ||||||| |
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| T |
32614342 |
agatcgtttaaagttgattttgttattgtgtaatttgatttgtccgatgtcaaatt |
32614397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 20770239 - 20770280
Alignment:
| Q |
594 |
tgattttgttattgtgtaatctgaattatccgatctcaaatt |
635 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||| |
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| T |
20770239 |
tgattttgttattgggtaatctgaatcgtccgatctcaaatt |
20770280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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