View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19476_low_6 (Length: 539)
Name: NF19476_low_6
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 172 - 519
Target Start/End: Original strand, 9796278 - 9796625
Alignment:
| Q |
172 |
ccttctccatcaccacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacac |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9796278 |
ccttctccatcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacac |
9796377 |
T |
|
| Q |
272 |
ctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggct |
371 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||| |
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| T |
9796378 |
ctccttctacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgct |
9796477 |
T |
|
| Q |
372 |
caacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga |
471 |
Q |
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|||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9796478 |
caacccacgaaacaatcgttgttgtaccctcatcagcggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga |
9796577 |
T |
|
| Q |
472 |
ataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9796578 |
ataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgt |
9796625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 172 - 519
Target Start/End: Original strand, 9802279 - 9802626
Alignment:
| Q |
172 |
ccttctccatcaccacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacac |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9802279 |
ccttctccatcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacac |
9802378 |
T |
|
| Q |
272 |
ctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggct |
371 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||| |
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| T |
9802379 |
ctccttctacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgct |
9802478 |
T |
|
| Q |
372 |
caacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga |
471 |
Q |
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|||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9802479 |
caacccacgaaacaatcgttgttgtaccctcatcagcggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga |
9802578 |
T |
|
| Q |
472 |
ataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9802579 |
ataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgt |
9802626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 229 - 475
Target Start/End: Original strand, 9757184 - 9757427
Alignment:
| Q |
229 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaa |
328 |
Q |
| |
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|||| ||||||||||| |||||||| ||||||||| ||| |||||| ||||||||||| | ||||| ||||| |||| |||||| ||||||| |
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| T |
9757184 |
cctaggacacctccttttacaccaccaccaattcctaggactcctcctactacaccaccatcaattccaacaacaccgccgcgtaattgtccacttttaa |
9757283 |
T |
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| Q |
329 |
acttgaacatttgcgcaaacatattgaataatgcagttgggctcaacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgc |
428 |
Q |
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| T |
9757284 |
gcttgaatgtttgtgccaacctattgaataa---attcgtgattaacccaggatccaatccttgttgtagcctcatcagcggccttgttgatttagacgc |
9757380 |
T |
|
| Q |
429 |
cgctgtgtgtgtttgcgctgcactcaaagctaatatcataggaataa |
475 |
Q |
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|||||||| ||||| ||||||| ||||||||| || ||||||||| |
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| T |
9757381 |
ttctgtgtgtctttgcactgcacttaaagctaatgtcttaggaataa |
9757427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 9757151 - 9757218
Alignment:
| Q |
229 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
296 |
Q |
| |
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|||| |||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
9757151 |
cctaggacacctccttcgacaccaccaccaattcctaggacacctccttttacaccaccaccaattcc |
9757218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 9757118 - 9757185
Alignment:
| Q |
229 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
296 |
Q |
| |
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|||| |||||||||| |||||||||| ||| ||||| |||||||||||| ||||||||||| ||||| |
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| T |
9757118 |
cctaggacacctcctaccacaccaccaccaaatcctaggacacctccttcgacaccaccaccaattcc |
9757185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 9756998 - 9757065
Alignment:
| Q |
229 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
296 |
Q |
| |
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|||| |||||||||| ||||||||||| ||| ||||| |||||||||| | | ||||||||| ||||| |
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| T |
9756998 |
cctaggacacctcctaccacaccaccgacaaatcctaggacacctcctaccataccaccaccaattcc |
9757065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 9756865 - 9756918
Alignment:
| Q |
237 |
acctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
290 |
Q |
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||||||| |||||||||| ||| ||||| |||||||||||| ||||||||||| |
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| T |
9756865 |
acctcctaccacaccaccaccaaatcctatgacacctccttcgacaccaccacc |
9756918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 9757031 - 9757092
Alignment:
| Q |
229 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
290 |
Q |
| |
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|||| |||||||||| ||| |||||| ||||||||| |||||||||| | ||||||||||| |
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| T |
9757031 |
cctaggacacctcctaccataccaccaccaattcctaggacacctcctaccacaccaccacc |
9757092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 9756775 - 9756831
Alignment:
| Q |
234 |
gacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
290 |
Q |
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|||||||||| ||||||||||| ||| ||| | |||||||||| | ||||||||||| |
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| T |
9756775 |
gacacctcctaccacaccaccgacaaatcccaggacacctcctaccacaccaccacc |
9756831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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