View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_high_1 (Length: 634)
Name: NF19477_high_1
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 21 - 630
Target Start/End: Complemental strand, 34419694 - 34419092
Alignment:
| Q |
21 |
tacagattaaccctagacagcctatactttaaggaaggagacaaacatgtactataaataaaaacaaacataactacattgtaacaggaatcaccttgga |
120 |
Q |
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| T |
34419694 |
tacaaattaatcctaaacagcctatactttaagga----gacaaacatgtactacaaataaaaacaaacataataacattgtaacaggaatcaccttggt |
34419599 |
T |
|
| Q |
121 |
ctgtgatggtatggggcaacaaaagcccattcttgtttcctgtaaacaagtagtagaagaaaggtgtgcaaattaggtgataggtctaaaactaatacat |
220 |
Q |
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| T |
34419598 |
ctgtggtggtatggggcaacaaaagcccattcttgtttcctgtaaaccagcagtagaagaaaggtgtgcaaattaggcgataggtctaaaactaatacat |
34419499 |
T |
|
| Q |
221 |
gataaatcaataaaaagaaaaactgatttaactgtctttaattaaaggaggaaaacatgtagctgataaagaaagagtgtggctgtggagccatctctct |
320 |
Q |
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| T |
34419498 |
gataaatcaataaaaagaaatactgatttaacggtctttaattaaaggaggaaaacatgtagctgataaagaaagagtgtggctgtggagccatctctct |
34419399 |
T |
|
| Q |
321 |
taacaaaggaaaatactttaccaacagaaagaagaccaacaaggcgagtgctagcaatggatgttttgaccacagggataatatctgctaattcagcttc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
34419398 |
taacaaaggaaaatactttaccaacagaaagaagaccaacaaggcgagtgctagcaatggatgttttgaccacagggataatatctgctagttcagcctc |
34419299 |
T |
|
| Q |
421 |
aaatgcactatatcaaaaaacaaattattaatttattcatctggataacagtcatagcaatttcaatccatttgaaaccaagaataaataataaataact |
520 |
Q |
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| T |
34419298 |
aaatgcactatatcaaagaacaa---attaatttattcatctggataacagtcattgcaatttcaatccatttaaaaccaagaataaatagtaaataagt |
34419202 |
T |
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| Q |
521 |
gaattatatttgggagtatatttccactagtctgaagagaatgaaaacctgtagaaatttgcagaacctccaatagcagtcaaacaatacgcattggtaa |
620 |
Q |
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|| | || |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419201 |
taaatgtaattgggaatatatttccactagtttgaaaagaatgaaaacctgtagaaatttgcagaacctccaatagcagtcaaacaatacgcattggtaa |
34419102 |
T |
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| Q |
621 |
gttttgagaa |
630 |
Q |
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|||||||||| |
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| T |
34419101 |
gttttgagaa |
34419092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 559 - 631
Target Start/End: Complemental strand, 34422531 - 34422459
Alignment:
| Q |
559 |
gaatgaaaacctgtagaaatttgcagaacctccaatagcagtcaaacaatacgcattggtaagttttgagaag |
631 |
Q |
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| T |
34422531 |
gaatgaaaacctgtagaaattttcagaacctccaatggcaaccaaacaataggcattggtaagttttgagaag |
34422459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 34422841 - 34422780
Alignment:
| Q |
106 |
aggaatcaccttggactgtgatggtatggggcaacaaaagcccattcttgtttcctgtaaac |
167 |
Q |
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| T |
34422841 |
aggaatcaccttggtctgtggtggtatggggcaatagaagcccattcttatttcctgcaaac |
34422780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 34422713 - 34422601
Alignment:
| Q |
330 |
aaaatactttaccaacagaaagaagaccaacaaggcgagtgctagcaatggatgttttgaccacagggataatatctgctaattcagcttcaaatgcact |
429 |
Q |
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|||||| |||||||| | |||| ||||||||| ||||| | | ||||||| ||||| | ||||||||||| ||||| ||| ||||| ||||||||||| |
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| T |
34422713 |
aaaataatttaccaatacaaaggcgaccaacaatacgagtaccaccaatggaagttttaatcacagggataacatctgataactcagcctcaaatgcact |
34422614 |
T |
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| Q |
430 |
atatcaaaaaaca |
442 |
Q |
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||||||| |||| |
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| T |
34422613 |
gtatcaaacaaca |
34422601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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