View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_high_10 (Length: 417)
Name: NF19477_high_10
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 21696237 - 21696623
Alignment:
| Q |
16 |
cacaaccaaaaacggtaacatttagatctttacttgttgattcaggcagatactatcatgacttttactgaaatcttctttcttgaattttgattacttt |
115 |
Q |
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| T |
21696237 |
cacaaccaaaaacggtaacatttagatctttacttgttgattcaggcagatactatcatgacttttactgaaatcttctttcttgaattttgattacttt |
21696336 |
T |
|
| Q |
116 |
actgtgttaaattgcaggaaagatgggataacatatcaagcagcgaatatgtcatcatcatgtggaaggttcttacattagcactaactctcttcttcct |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21696337 |
actgtgttaaattgcaggagagatgggataacatatcaagcagcgaatatgtcatcatcatgtggaagattcttacattagcactaactctcttcttcct |
21696436 |
T |
|
| Q |
216 |
tcttttcttattcgtacaaattgtaaatgcaagaagaagaacgtcgaaggttaagaagtaaagtagtcgagtcataatttgtgggaactaacatggattt |
315 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
21696437 |
tcttttcttattcatacaaattgtaaatgcaagaagaagaatgttgaaggttaagaagtaaagtagtcgagtcataatttgtggtaactaacacggattt |
21696536 |
T |
|
| Q |
316 |
agagaacaaaatatattcagacagaattacattcaggtttggatcgagtgatccatatttccatcaccaatcctataacgcaaattgatg |
405 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21696537 |
agag---aaaatatattcagacagaattacattcaggtttggatcgagtgatccatatttccatcaccaatcctataacgcaaattgatg |
21696623 |
T |
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