View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_high_11 (Length: 392)
Name: NF19477_high_11
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 45147828 - 45147613
Alignment:
| Q |
18 |
aggatagaaaaagggtgatcaatatcatttttctgttgtagtcaagcgagaaaatccaacatgagttttagaatgagaagtattgcctacctctttgttc |
117 |
Q |
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| T |
45147828 |
aggatagaaaaagggtgatcaata-catttttctgttgtagtcaagcgagaaaatccaacatgagtcttagaatgagaagtattgcctacctctttgttc |
45147730 |
T |
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| Q |
118 |
caattggttttgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacctccccaaagtccctnnnnnnnttcagaatcattat |
217 |
Q |
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| T |
45147729 |
caattggttttgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacctccccaaagtccctaaaaaaattcagaatcattag |
45147630 |
T |
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| Q |
218 |
aaagagttgttcgcttc |
234 |
Q |
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| T |
45147629 |
aaagagttgttcgcttc |
45147613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 261 - 392
Target Start/End: Complemental strand, 45147586 - 45147455
Alignment:
| Q |
261 |
atcttctacctataaaacagtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
360 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45147586 |
atcttctacctataaaacggtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
45147487 |
T |
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| Q |
361 |
caacagcaaacaagtaaggacacatttacttt |
392 |
Q |
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| T |
45147486 |
caacagcaaacaagtaaggacacatttacttt |
45147455 |
T |
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