View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_high_14 (Length: 335)
Name: NF19477_high_14
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 45147090 - 45147407
Alignment:
| Q |
18 |
tccactagggtacattcttggtaatgttgcagaattgggggttaaggtaatgtatttgctattcactattctatttctgttcgtttcttaaccttgaaga |
117 |
Q |
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| T |
45147090 |
tccactagggtacattcttggtaatgttgcagaattgggggttaaggtaatgtatttgctattcactattctatttctgttcgtttcttaaccttgaaga |
45147189 |
T |
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| Q |
118 |
acttcataaatttagtcaaacataaacttttacattttgatctgcaaaattgagaagaaaggaaaatattagagctctttttgttctagtgataaaataa |
217 |
Q |
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| T |
45147190 |
acttcataaatttagtcaaacataaacttttacattttgatctgcaaaattgagaagaaaggaaaatattagagccctttttgttctagtgataaaataa |
45147289 |
T |
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| Q |
218 |
acgctacagaaagtattacggaattttttgaaaatgcattttaatgaaaattctgaaaatgtattttctcgagtttgcttgaatcttttctctatcacaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45147290 |
acgctacagaaagtattacggaattttttgaaaatgcattttaatgaaaattctgaaaatgtattttctcgagtttgcttgaatcttttctctatcacaa |
45147389 |
T |
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| Q |
318 |
ttaagaaagaaaattcat |
335 |
Q |
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| T |
45147390 |
ttaagaaagaaaattcat |
45147407 |
T |
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