View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_high_17 (Length: 282)
Name: NF19477_high_17
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 34419723 - 34419980
Alignment:
| Q |
1 |
tttcatctttgctggtggcataataaagctcaacaccagttctgaatcttccaatattgtactgacttatggaacttgatctttttgtcatgtttattgt |
100 |
Q |
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| T |
34419723 |
tttcatctttccttgtggcataataaagctcaacaccagttctgaattttccgatattgtactgacttatggaactt-------ttgtcatggttattgc |
34419815 |
T |
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| Q |
101 |
tgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtatagaagaaaaattgtctgctctgggaaattgtatagcatgcaat |
200 |
Q |
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| T |
34419816 |
tgaagagcttcaacatttgagaaacagtctacctgatcatgtacttgttcagcgtatagaagaaaaattgtctgctctgggaaattgtatagcatgcaat |
34419915 |
T |
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| Q |
201 |
gaccatgttgcccttgcacacactgatctcgacaaggtattgtcttattatagataatagccttt |
265 |
Q |
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| T |
34419916 |
gaccatgttgcccttgcacacgctgatctcgacaaggtattgccttgttatagataatagccttt |
34419980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 61 - 261
Target Start/End: Original strand, 34423976 - 34424176
Alignment:
| Q |
61 |
actgacttatggaacttgatctttttgtcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtataga |
160 |
Q |
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| T |
34423976 |
actgacttaaggaaattgatatttttttcatggctattgttgaagaacttcaacatttgaaaaacagtctacctgatcgagtttgtgttcagcgcataga |
34424075 |
T |
|
| Q |
161 |
agaaaaattgtctgctctgggaaattgtatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggtattgtcttattatagataatag |
260 |
Q |
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| T |
34424076 |
agaaagattatctgctctgggaaattgtattgcatgtaatgaccatgtggccctcacgcacaccgatctcgacaaggtattgtgttattatagattatag |
34424175 |
T |
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| Q |
261 |
c |
261 |
Q |
| |
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| T |
34424176 |
c |
34424176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 24346783 - 24346956
Alignment:
| Q |
88 |
tcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtatagaagaaaaattgtctgctctgggaaattg |
187 |
Q |
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||||| |||||| || ||| ||||| |||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| |||||| |||||||||| |
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| T |
24346783 |
tcatggttattgctgcagaacttcaacatttgagaaacagtctacccgatcaagttgttgttcagaggatagaagaaaaattatctgctttgggaaattg |
24346882 |
T |
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| Q |
188 |
tatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggta-ttgtcttattatagataatag |
260 |
Q |
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| T |
24346883 |
tatagcatgtaatgaccatgtggctctcactcacaccgatcttgacagggtatttgtcttattgtagattatag |
24346956 |
T |
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