View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_high_20 (Length: 256)
Name: NF19477_high_20
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36109233 - 36108998
Alignment:
| Q |
1 |
caatacaaaactctactataatttgtctataatgtgtggcaaatatagatttcgtgtgatttcgcactcttggacgaatataaaagaattacnnnnnnnn |
100 |
Q |
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| T |
36109233 |
caatacaaaactctactataatttgtctataatgtgtggcaaatatagatttcgtgtgatttcgcactcttggacgaatataaaagaattacaaaataaa |
36109134 |
T |
|
| Q |
101 |
nnnntagaggtgtgaaattcggacatgcgttattagagaaatacatctcttaataagaaagataaaatgaatttgatttacgatttttgctaccattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36109133 |
a---tagaggtgtgaaattcggacatgcgttattagagaaatacatctcttaataagaaagataaaatgaatttgatttacgatttttgctaccattgaa |
36109037 |
T |
|
| Q |
201 |
tgatttttgactcatttgtggttttgtagatatcgagac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
36109036 |
tgatttttgactcatttgtggttttgtagatatcgagac |
36108998 |
T |
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