View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19477_high_23 (Length: 250)

Name: NF19477_high_23
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19477_high_23
NF19477_high_23
[»] chr4 (13 HSPs)
chr4 (124-247)||(37306454-37306577)
chr4 (137-248)||(43480265-43480376)
chr4 (123-241)||(50251507-50251625)
chr4 (163-247)||(51475212-51475296)
chr4 (142-247)||(30111795-30111899)
chr4 (163-238)||(31699536-31699611)
chr4 (163-248)||(6540272-6540357)
chr4 (195-247)||(2834198-2834250)
chr4 (195-247)||(27362638-27362690)
chr4 (177-240)||(38294162-38294225)
chr4 (198-247)||(26369099-26369148)
chr4 (213-250)||(39401358-39401395)
chr4 (187-240)||(51823131-51823184)
[»] chr8 (14 HSPs)
chr8 (142-250)||(28700581-28700689)
chr8 (123-250)||(6580838-6580964)
chr8 (163-241)||(33440558-33440636)
chr8 (142-247)||(30085426-30085531)
chr8 (13-68)||(28700378-28700433)
chr8 (142-247)||(1311488-1311593)
chr8 (163-248)||(33133479-33133564)
chr8 (157-223)||(31703822-31703888)
chr8 (199-240)||(31024183-31024224)
chr8 (166-228)||(12212174-12212236)
chr8 (166-228)||(12456602-12456664)
chr8 (149-219)||(36927032-36927102)
chr8 (143-247)||(35188402-35188506)
chr8 (132-248)||(45057956-45058072)
[»] chr2 (11 HSPs)
chr2 (123-240)||(42635316-42635433)
chr2 (163-248)||(5140017-5140102)
chr2 (137-241)||(37285169-37285273)
chr2 (173-240)||(6951756-6951823)
chr2 (147-241)||(7709779-7709872)
chr2 (163-217)||(864178-864232)
chr2 (162-240)||(8503821-8503899)
chr2 (142-246)||(23403738-23403842)
chr2 (145-225)||(14960718-14960798)
chr2 (173-235)||(23494325-23494387)
chr2 (150-222)||(37078035-37078107)
[»] chr7 (16 HSPs)
chr7 (142-250)||(47822007-47822115)
chr7 (132-249)||(557423-557540)
chr7 (143-238)||(39237689-39237784)
chr7 (163-241)||(42815604-42815682)
chr7 (163-240)||(17878729-17878806)
chr7 (162-247)||(41873484-41873569)
chr7 (142-225)||(43930030-43930112)
chr7 (189-248)||(36738532-36738591)
chr7 (129-250)||(45508542-45508661)
chr7 (182-247)||(29310470-29310535)
chr7 (127-247)||(25695892-25696012)
chr7 (163-241)||(3399040-3399122)
chr7 (181-241)||(16082817-16082877)
chr7 (142-186)||(29310448-29310492)
chr7 (123-155)||(43930111-43930143)
chr7 (173-225)||(48745298-48745350)
[»] chr5 (11 HSPs)
chr5 (142-250)||(42958466-42958574)
chr5 (130-241)||(18237190-18237301)
chr5 (123-247)||(10393768-10393892)
chr5 (123-225)||(32153763-32153865)
chr5 (127-241)||(17190663-17190779)
chr5 (162-225)||(5990589-5990652)
chr5 (142-248)||(30892135-30892241)
chr5 (163-225)||(41020248-41020310)
chr5 (125-225)||(34320930-34321030)
chr5 (123-241)||(28436457-28436573)
chr5 (137-221)||(27726818-27726902)
[»] chr1 (14 HSPs)
chr1 (142-248)||(19078939-19079045)
chr1 (142-248)||(19126827-19126933)
chr1 (142-248)||(24886065-24886171)
chr1 (147-240)||(29068111-29068204)
chr1 (165-225)||(932030-932090)
chr1 (123-217)||(11709656-11709748)
chr1 (163-248)||(16173057-16173141)
chr1 (163-223)||(14562603-14562663)
chr1 (163-240)||(31602108-31602185)
chr1 (162-247)||(43275825-43275910)
chr1 (123-156)||(29068075-29068108)
chr1 (179-224)||(52444448-52444493)
chr1 (173-225)||(17642410-17642462)
chr1 (197-245)||(24733928-24733976)
[»] chr3 (16 HSPs)
chr3 (162-250)||(13639450-13639538)
chr3 (142-248)||(54186976-54187082)
chr3 (123-225)||(46893416-46893516)
chr3 (162-248)||(38602856-38602942)
chr3 (123-250)||(50320422-50320548)
chr3 (163-241)||(20909347-20909425)
chr3 (142-248)||(29235675-29235781)
chr3 (163-238)||(48543200-48543275)
chr3 (123-247)||(28215775-28215899)
chr3 (123-202)||(45800724-45800801)
chr3 (194-241)||(54140813-54140860)
chr3 (178-240)||(26223195-26223257)
chr3 (147-224)||(357833-357910)
chr3 (123-155)||(8700200-8700232)
chr3 (123-155)||(9052087-9052119)
chr3 (199-247)||(42780755-42780803)
[»] chr6 (4 HSPs)
chr6 (166-248)||(7447613-7447695)
chr6 (142-224)||(32439504-32439586)
chr6 (123-248)||(30479909-30480035)
chr6 (163-224)||(17221582-17221643)
[»] scaffold0922 (1 HSPs)
scaffold0922 (163-240)||(714-791)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 37306577 - 37306454
Alignment:
Q  124 aggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtga 223  Q
    ||||||| |||| ||||| ||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  37306577 aggagtgctatggacactttctttctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtga 37306478  T
Q  224 gatccgcatgagtttcactcaata 247  Q
    || || |||||||||||| |||||    
T  37306477 gacccacatgagtttcacccaata 37306454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 43480265 - 43480376
Alignment:
Q  137 acactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagt 236  Q
    |||| |||| ||||||||| ||||  ||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||    
T  43480265 acaccctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacatgagt 43480364  T
Q  237 ttcactcaatag 248  Q
    ||||| ||||||    
T  43480365 ttcacccaatag 43480376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 50251625 - 50251507
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| |||| ||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||| ||| ||||| ||||||| |||| |||||    
T  50251625 gaggagtgctatgaacactctctttctaacactcacttttttattgggtgaaattcatgtggataccacacgttgaaaatggatcccacgtaaaatggtg 50251526  T
Q  223 agatccgcatgagtttcac 241  Q
    |||  | ||||||||||||    
T  50251525 agactcacatgagtttcac 50251507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 51475296 - 51475212
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||    
T  51475296 ttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaata 51475212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 30111795 - 30111899
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| ||||  ||||||| | ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  30111795 ctctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacattggaattga-tcccacataaagtggtgagatccacatgagtttcac 30111893  T
Q  242 tcaata 247  Q
     |||||    
T  30111894 ccaata 30111899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 31699611 - 31699536
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagttt 238  Q
    ||||||||| ||||||||||||||| || |||||||||||| | |||||||||| |||||||| || |||| ||||    
T  31699611 ttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgagacccacatgtgttt 31699536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 6540272 - 6540357
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    ||||||||| ||||  |||||| || || |||||||||||| |||| ||| ||||||||||||||| ||| |||||||| ||||||    
T  6540272 ttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagatccacataagtttcacccaatag 6540357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 2834198 - 2834250
Alignment:
Q  195 ttggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    ||||||||| |||||||||||||| | |||| | |||||||||||||||||||    
T  2834198 ttggaaatggatcccacataaagttgcgagacctgcatgagtttcactcaata 2834250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 27362638 - 27362690
Alignment:
Q  195 ttggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    ||||||||| ||| ||| |||||||||||||||| ||||||||||| ||||||    
T  27362638 ttggaaatggatctcacgtaaagtggtgagatccacatgagtttcattcaata 27362690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 38294162 - 38294225
Alignment:
Q  177 tcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    |||||||||||||| || |||  ||||||||||| ||||| ||||||||  |||||||||||||    
T  38294162 tcatgtgggtaccagactttgagaatgaatcccaaataaaatggtgagactcgcatgagtttca 38294225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 26369099 - 26369148
Alignment:
Q  198 gaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    |||||||| ||||||||||||| ||||| || ||||| ||||||||||||    
T  26369099 gaaatgaaacccacataaagtgatgagacccacatgactttcactcaata 26369148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 39401395 - 39401358
Alignment:
Q  213 taaagtggtgagatccgcatgagtttcactcaatagaa 250  Q
    |||||||||||||||| | |||||||||||||||||||    
T  39401395 taaagtggtgagatccacgtgagtttcactcaatagaa 39401358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 51823131 - 51823184
Alignment:
Q  187 accacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    ||||||||||  ||||| ||| ||||||||||||||||| || |||||||||||    
T  51823131 accacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttca 51823184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 28700581 - 28700689
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||   ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  28700581 ctctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgagactcacatgagtttcac 28700680  T
Q  242 tcaatagaa 250  Q
    |||||||||    
T  28700681 tcaatagaa 28700689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 6580838 - 6580964
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| |||| ||| ||||||||||||| | ||    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6580838 gaggagtgctatggacagtctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaatg-atcccacataaagtggtg 6580936  T
Q  223 agatccgcatgagtttcactcaatagaa 250  Q
    ||| || |||||||||||| ||||||||    
T  6580937 agacccacatgagtttcacccaatagaa 6580964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 33440636 - 33440558
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  33440636 ttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 33440558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 30085531 - 30085426
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| |||||||||||||   |||||| || ||||||||||| ||  ||||  ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30085531 ctctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttcac 30085432  T
Q  242 tcaata 247  Q
     |||||    
T  30085431 ccaata 30085426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 28700378 - 28700433
Alignment:
Q  13 aatatacactttagaaaaccgtcagcattcagacggacaacatgtgaccttctttt 68  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  28700378 aatatacactttagaaaacagttagcattcagacggacaacatgtgaccttctttt 28700433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 1311593 - 1311488
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||||||||||||| || |  ||||| ||| | || |||||||||  ||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||    
T  1311593 ctctttctaacactcacattcttatttggtgagatccatgtgggtttcacactttggaaatggatcccacataaaatggtgagacccgcatgggtttcac 1311494  T
Q  242 tcaata 247  Q
     |||||    
T  1311493 ccaata 1311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 33133479 - 33133564
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    ||||||| | ||||||||||  ||||||||| |||||||||  ||| |||||||||||||||  || |||||||||||| ||||||    
T  33133479 ttattggatgaaattcatgtaagtaccacactttggaaatgggtccgacataaagtggtgaggcccacatgagtttcacgcaatag 33133564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 31703888 - 31703822
Alignment:
Q  157 acttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtga 223  Q
    |||| |||||||| | ||||| |||||| || ||||| ||||||||| |||||||||||||||||||    
T  31703888 acttttttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 31024183 - 31024224
Alignment:
Q  199 aaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  31024183 aaatgaatcccacataaagtggtgagacccacatgagtttca 31024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 12212174 - 12212236
Alignment:
Q  166 ttgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatcc 228  Q
    |||||| ||||  |||||||| | |||| |||||||||  |||||||||||||||||||||||    
T  12212174 ttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatcc 12212236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 12456602 - 12456664
Alignment:
Q  166 ttgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatcc 228  Q
    |||||| ||||  |||||||| | |||| |||||||||  |||||||||||||||||||||||    
T  12456602 ttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatcc 12456664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 36927032 - 36927102
Alignment:
Q  149 taacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtg 219  Q
    |||||||||||  ||||| || | |||||||||||| ||| |||||||  ||||| |||||||||||||||    
T  36927032 taacacttactcttttatcggataaaattcatgtggatacaacacatttaaaatggatcccacataaagtg 36927102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 35188506 - 35188402
Alignment:
Q  143 tctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcact 242  Q
    ||||||||||||| |||   |||| |||| ||||| ||||||||  ||||| ||||||||   |||||| |||||||||| ||||| ||||  ||||||     
T  35188506 tctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactttggaaataggtcccacgtaaagtggtgggatccacatggctttcacc 35188407  T
Q  243 caata 247  Q
    |||||    
T  35188406 caata 35188402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 45058072 - 45057956
Alignment:
Q  132 tatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgca 231  Q
    |||| ||||| ||| ||||||||| |||   ||||||| | ||| | ||||| ||  ||||| ||||||||| |||||||||||||||  |||| || ||    
T  45058072 tatgaacactttctctctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccaca 45057973  T
Q  232 tgagtttcactcaatag 248  Q
    | |||||||| ||||||    
T  45057972 taagtttcacccaatag 45057956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 42635316 - 42635433
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| |||| ||||||||||||||| ||  |||| |||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||| ||    
T  42635316 gaggagtgctatggacactctctttctaatacccacttttttattgggtgaaattcatgtgggtaccacacattgaaaatggattccacataaagtgatg 42635415  T
Q  223 agatccgcatgagtttca 240  Q
    ||| || |||||||||||    
T  42635416 agacccacatgagtttca 42635433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 5140102 - 5140017
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    |||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||| ||||||    
T  5140102 ttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaatag 5140017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 37285273 - 37285169
Alignment:
Q  137 acactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagt 236  Q
    ||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||  |  ||||||    
T  37285273 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgagactcaaatgagt 37285174  T
Q  237 ttcac 241  Q
    |||||    
T  37285173 ttcac 37285169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 6951756 - 6951823
Alignment:
Q  173 aaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  6951756 aaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 6951823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 7709779 - 7709872
Alignment:
Q  147 tctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    ||||||||| |||  |||||||||| || || ||||||||||||||||||||||||  ||||||||||||||||||||  || ||||||||||||    
T  7709779 tctaacactcactcttttattgggtgaattt-atgtgggtaccacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcac 7709872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 864232 - 864178
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaag 217  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||||    
T  864232 ttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaag 864178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 8503821 - 8503899
Alignment:
Q  162 tttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    |||||||||| ||||  |||||| |||| ||||||  ||||||||| |||||||||||||||||||| |||||||||||    
T  8503821 tttattgggtgaaatctatgtggataccgcacattaaaaatgaatctcacataaagtggtgagatccacatgagtttca 8503899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 23403842 - 23403738
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    ||||||||||| || |||   ||| ||||| |||| |||||||||||||||| |||||||||  ||||| |||||| || |||| || ||||||||||||    
T  23403842 ctctttctaaccctcactctcttactgggtgaaatccatgtgggtaccacactttggaaatgggtcccaaataaagcggcgagacccacatgagtttcac 23403743  T
Q  242 tcaat 246  Q
     ||||    
T  23403742 ccaat 23403738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 14960798 - 14960718
Alignment:
Q  145 tttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    ||||||||||  ||||||||||||| | ||||| |||||| ||| |||||||| ||||| ||| |||||||| | ||||||    
T  14960798 tttctaacacccacttgtttattggatgaaatttatgtggatactacacattgaaaatggatctcacataaaatagtgaga 14960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 23494387 - 23494325
Alignment:
Q  173 aaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgag 235  Q
    |||||||||||| || ||||| ||| ||||||||| |||||||| | |||||| |||||||||    
T  23494387 aaattcatgtggatatcacactttgaaaatgaatctcacataaattagtgagacccgcatgag 23494325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 37078107 - 37078035
Alignment:
Q  150 aacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||| ||||  ||||||| ||||||| | ||||||  ||||||||||||||| || |||| ||||||||||    
T  37078107 aacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtg 37078035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 47822007 - 47822115
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||  | |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  47822007 ctctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcac 47822106  T
Q  242 tcaatagaa 250  Q
     ||||||||    
T  47822107 ccaatagaa 47822115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 557540 - 557423
Alignment:
Q  132 tatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgca 231  Q
    |||| ||||||||||||||||||| |||   ||||||| | ||||||||||||||| ||||||||  ||||| ||||||||||||||||||||| || ||    
T  557540 tatggacactctctttctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagacccaca 557441  T
Q  232 tgagtttcactcaataga 249  Q
    |||||||||| |||||||    
T  557440 tgagtttcacccaataga 557423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 39237689 - 39237784
Alignment:
Q  143 tctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagttt 238  Q
    |||||| |||||| |||  |||||||||| || || ||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||    
T  39237689 tctttccaacactcactcttttattgggtgaagtttatgtgggtaccacacattggaaatggatcccatataaagtggtgagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 42815604 - 42815682
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    ||||||||| ||||||||||||||||| ||||||| ||||| || || ||||||||||||||| || ||||||||||||    
T  42815604 ttattgggtgaaattcatgtgggtaccgcacattgaaaatggattccccataaagtggtgagacccacatgagtttcac 42815682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 17878729 - 17878806
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    ||||||||| ||| ||||||||||| |||||||| |||||  |||||||||||||||||||||||  |||||||||||    
T  17878729 ttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagatcgacatgagtttca 17878806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 41873569 - 41873484
Alignment:
Q  162 tttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    |||||||||| || ||||||||||||||||||||| |||||| | ||||||||||||| |||||  | |||||||||||| |||||    
T  41873569 tttattgggtgaagttcatgtgggtaccacacattagaaatggaacccacataaagtgatgagactcacatgagtttcacccaata 41873484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 43930112 - 43930030
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    |||| ||||||||| |||  |||||||||| ||||||||||||||||||||||||| ||||| ||| || ||||||||||||||    
T  43930112 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga 43930030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 36738532 - 36738591
Alignment:
Q  189 cacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    ||||| ||||||||| ||||||||||||||||||||| || |||||||||||| ||||||    
T  36738532 cacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcacccaatag 36738591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 45508661 - 45508542
Alignment:
Q  129 tgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatcc 228  Q
    ||||||| |||||||||  ||||||||  |||  ||||||||  |||||||||||||||  ||||||||  |||| ||||||| ||||||||||||| ||    
T  45508661 tgttatgaacactctct--ctaacactccctttcttattgggcgaaattcatgtgggtatgacacattgagaatggatcccacgtaaagtggtgagaccc 45508564  T
Q  229 gcatgagtttcactcaatagaa 250  Q
     | || ||||||| ||||||||    
T  45508563 acgtgggtttcacccaatagaa 45508542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 29310535 - 29310470
Alignment:
Q  182 tgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    ||||| ||||||  |||||||| ||||||||||||||||||||| || |||||||||||| |||||    
T  29310535 tgggtcccacactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaata 29310470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 25695892 - 25696012
Alignment:
Q  127 agtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagat 226  Q
    |||| |||||| ||||||||| ||||| | | |  |||||||  | ||||||||| |  ||||||| ||| |||||| | | |||||||| |||||||||    
T  25695892 agtgctatgtatactctctttttaacattcaatcttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtgagat 25695991  T
Q  227 ccgcatgagtttcactcaata 247  Q
    || |||||||||||| |||||    
T  25695992 ccacatgagtttcacccaata 25696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 3399122 - 3399040
Alignment:
Q  163 ttattgggttaaattcatgtgggtac----cacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||||| || |||||||||||||||     ||||||||| |||| ||||  |||||||||||||||| || ||||||||||||    
T  3399122 ttattgagtgaaattcatgtgggtatataacacacattgaaaataaatcttacataaagtggtgagacccacatgagtttcac 3399040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 16082817 - 16082877
Alignment:
Q  181 gtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||||||||||| ||||||| || || |||||||||| ||||||| || ||||| ||||||    
T  16082817 gtgggtaccacatattggaagtggattccacataaagaggtgagacccacatgaatttcac 16082877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 29310448 - 29310492
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggt 186  Q
    |||||||||||||| |||| |||||||||| ||| ||||||||||    
T  29310448 ctctttctaacactcacttttttattgggtgaaactcatgtgggt 29310492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 43930143 - 43930111
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacact 155  Q
    ||||||||||||| |||||||||||||||||||    
T  43930143 gaggagtgttatggacactctctttctaacact 43930111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 48745350 - 48745298
Alignment:
Q  173 aaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    ||||| |||||| |||||||||||| ||||| |||||||||||| || |||||    
T  48745350 aaatttatgtggataccacacattgcaaatggatcccacataaattgatgaga 48745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 42958466 - 42958574
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||| | |||| |||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||     
T  42958466 ctctctctaacagtcacttttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttcat 42958565  T
Q  242 tcaatagaa 250  Q
     ||||||||    
T  42958566 ccaatagaa 42958574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 18237301 - 18237190
Alignment:
Q  130 gttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccg 229  Q
    |||||| ||||||||||||||||||| |||  |||||||||| ||||||||||||||| ||||||||| ||||  ||||||||||||||||||||| ||     
T  18237301 gttatggacactctctttctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagaccca 18237202  T
Q  230 catgagtttcac 241  Q
    ||||| ||||||    
T  18237201 catgaatttcac 18237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 10393892 - 10393768
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| || | ||||||| |||||||||||| |||  ||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||| |||    
T  10393892 gaggagtgatacggacactctatttctaacacttgctttcttattgggtgaaattcatgtgggtactacacattgaaaataaatcccacataaagtagtg 10393793  T
Q  223 agatccgcatgagtttcactcaata 247  Q
    || ||| |  |||||||||||||||    
T  10393792 agttccactcgagtttcactcaata 10393768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 32153865 - 32153763
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| ||||| |||||||||||||||||| |||   ||||||||| |||  ||||||| | |||||| ||||||||| ||||||||||||||||||    
T  32153865 gaggagtgctatgtgcactctctttctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtg 32153766  T
Q  223 aga 225  Q
    |||    
T  32153765 aga 32153763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 17190779 - 17190663
Alignment:
Q  127 agtgttatgtacactctctttctaacacttacttgtt--tattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgag 224  Q
    |||| |||||||||| |||||||||||||  |||  |  | |||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  17190779 agtgctatgtacactttctttctaacactctctttctcttgttgggtgaaattcatgcgggtaccacacattagaaatggatcccacataaagtggtgag 17190680  T
Q  225 atccgcatgagtttcac 241  Q
    | || ||| ||||||||    
T  17190679 acccacataagtttcac 17190663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 5990652 - 5990589
Alignment:
Q  162 tttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  5990652 tttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 30892135 - 30892241
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||||||||||||| |||   ||||| ||| || ||||||||||||||||||||| |||||| |||||||||||| ||||||||  |  |||||||||||    
T  30892135 ctctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T
Q  242 tcaatag 248  Q
     ||||||    
T  30892235 ccaatag 30892241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 41020310 - 41020248
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    ||||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  41020310 ttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 41020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 34321030 - 34320930
Alignment:
Q  125 ggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgag 224  Q
    ||||||||||| ||||||||||| ||||||| | |   || |||||| |||| ||||||| ||||| || ||| ||||  ||||||||||||||||||||    
T  34321030 ggagtgttatgaacactctctttttaacactcattctcttgttgggtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgag 34320931  T
Q  225 a 225  Q
    |    
T  34320930 a 34320930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 28436573 - 28436457
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    ||||||||||||| |||||||  |||||||| | |||   | ||||||| |||||||||||| |||||||| || |||||| || ||  |||||||||||    
T  28436573 gaggagtgttatgaacactct--ttctaacattcactctctaattgggtgaaattcatgtggttaccacacttttgaaatggattccgtataaagtggtg 28436476  T
Q  223 agatccgcatgagtttcac 241  Q
    |||||  || |||||||||    
T  28436475 agatctacacgagtttcac 28436457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 27726818 - 27726902
Alignment:
Q  137 acactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggt 221  Q
    ||||||||||||  ||||| |||  |||||||||| ||||| |||||||| | |||| |||||||||  ||||||  ||||||||    
T  27726818 acactctctttcctacactcactcttttattgggtgaaattaatgtgggtcctacactttggaaatgggtcccactcaaagtggt 27726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 19078939 - 19079045
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||   ||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  19078939 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19079038  T
Q  242 tcaatag 248  Q
     ||||||    
T  19079039 ccaatag 19079045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 19126827 - 19126933
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||   ||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  19126827 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19126926  T
Q  242 tcaatag 248  Q
     ||||||    
T  19126927 ccaatag 19126933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 24886065 - 24886171
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||  |||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||| ||||||| || ||||||||||||    
T  24886065 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcac 24886164  T
Q  242 tcaatag 248  Q
     ||||||    
T  24886165 ccaatag 24886171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 29068111 - 29068204
Alignment:
Q  147 tctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    ||||||||| |||  |||||||||| |||| | |||||||||||||||||||||||  |||||||||||| |||||||| || |||||||||||    
T  29068111 tctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatcccacataaaatggtgagacccacatgagtttca 29068204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 932030 - 932090
Alignment:
Q  165 attgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  932030 attgggtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgaga 932090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 11709748 - 11709656
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaag 217  Q
    |||||||| |||| |||||||||  |||||||| |||   |||||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  11709748 gaggagtgctatggacactctct--ctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 16173057 - 16173141
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    ||||||||| |||| ||||||| |||| |||||||||||||||||||||||| || |||||||||| |||| ||||||| ||||||    
T  16173057 ttattgggtgaaatccatgtgg-taccccacattggaaatgaatcccacatatagaggtgagatccacatgggtttcacccaatag 16173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 14562663 - 14562603
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtga 223  Q
    |||||| || ||||| |||| |||||||||| ||||||||| |||||||||||||||||||    
T  14562663 ttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 31602108 - 31602185
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    ||||||| | ||| ||||||||||  ||||| ||||||||| ||||||| ||||||||||||| || |||| ||||||    
T  31602108 ttattggatgaaactcatgtgggtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttca 31602185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 43275910 - 43275825
Alignment:
Q  162 tttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    ||||||||||  ||| ||||||||||||| |  || |||||| |||||||||||| | |||||| || ||||| ||||||||||||    
T  43275910 tttattgggtggaatccatgtgggtaccagattttcgaaatggatcccacataaaatcgtgagacccacatgaatttcactcaata 43275825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 29068075 - 29068108
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacactt 156  Q
    ||||||||||||| ||||||||||||||||||||    
T  29068075 gaggagtgttatggacactctctttctaacactt 29068108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 52444493 - 52444448
Alignment:
Q  179 atgtgggtaccacacattggaaatgaatcccacataaagtggtgag 224  Q
    ||||||||||||||| || |||||| |||||||| |||||||||||    
T  52444493 atgtgggtaccacactttcgaaatggatcccacagaaagtggtgag 52444448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 17642410 - 17642462
Alignment:
Q  173 aaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgaga 225  Q
    |||| ||||||||||||||||||| |||||| |||  |||||||||| |||||    
T  17642410 aaatacatgtgggtaccacacattagaaatggatcatacataaagtgatgaga 17642462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 24733928 - 24733976
Alignment:
Q  197 ggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaa 245  Q
    ||||||| |||| ||||||||||||||||||| |||| |||| ||||||    
T  24733928 ggaaatggatccaacataaagtggtgagatccacatgggttttactcaa 24733976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 13639450 - 13639538
Alignment:
Q  162 tttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatagaa 250  Q
    |||||||| | ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| || |||||||||||| ||||||||    
T  13639450 tttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagacccacatgagtttcacccaatagaa 13639538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 54187082 - 54186976
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||   ||||||||| || ||||||||||||||||||||| |||||| |||||||||||| ||||||||| | ||||||||||||    
T  54187082 ctctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcac 54186983  T
Q  242 tcaatag 248  Q
     ||||||    
T  54186982 ccaatag 54186976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 46893516 - 46893416
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    ||||||||||||| |||||||||  |||||||| |||   |||||   | ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  46893516 gaggagtgttatggacactctct--ctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtg 46893419  T
Q  223 aga 225  Q
    |||    
T  46893418 aga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 38602856 - 38602942
Alignment:
Q  162 tttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    |||||| ||| ||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||  | |||||||||||| ||||||    
T  38602856 tttattcggtaaaatttatgtgggtaccacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcacccaatag 38602942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 50320422 - 50320548
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| |||  ||||||||||||||||| ||| |   ||||||||| || ||||| |||||| |||||||| |||||| |||||||||||| |||||    
T  50320422 gaggagtgctatagacactctctttctaacatttattctcttattgggtgaagttcatatgggtatcacacattagaaatg-atcccacataaaatggtg 50320520  T
Q  223 agatccgcatgagtttcactcaatagaa 250  Q
    |||  |  |||||||||| |||||||||    
T  50320521 agactcatatgagtttcattcaatagaa 50320548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 20909425 - 20909347
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    ||||||||| ||||||| ||||| |||||  |||| ||||| ||||||||||||||||||||| || ||||||||||||    
T  20909425 ttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgagacccacatgagtttcac 20909347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 29235675 - 29235781
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||| ||||||||| |||   ||||||||| ||||||||| || ||||||||||| |||||| |||| ||||||||||||||||  |  |||||||||||    
T  29235675 ctctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgagactcatatgagtttcac 29235774  T
Q  242 tcaatag 248  Q
     ||||||    
T  29235775 ccaatag 29235781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 48543275 - 48543200
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagttt 238  Q
    ||||||||| ||||||||||||||| || |||||||||||| | |||||||||| |||||||| || |||| ||||    
T  48543275 ttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgagacccacatgtgttt 48543200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 28215899 - 28215775
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtg 222  Q
    |||||||| |||| ||  ||||||||||||||  |||   ||||||||| ||| ||| ||||||  ||||| ||||||||| | ||| ||||||||| ||    
T  28215899 gaggagtgctatgaactgtctctttctaacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatg 28215800  T
Q  223 agatccgcatgagtttcactcaata 247  Q
    ||| || |||||||||||| |||||    
T  28215799 agacccacatgagtttcacccaata 28215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 45800724 - 45800801
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaat 202  Q
    ||||| ||||||| ||||||| ||||||||||| | |  |||||||||| ||||  |||||||||||||||||| |||||    
T  45800724 gaggactgttatggacactctgtttctaacactcattcttttattgggtgaaat--atgtgggtaccacacattagaaat 45800801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 54140813 - 54140860
Alignment:
Q  194 attggaaatgaatcccacataaagtggtgagatccgcatgagtttcac 241  Q
    |||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  54140813 attggaaatggatcccacataaagtggtgagactcgcatgaatttcac 54140860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 26223257 - 26223195
Alignment:
Q  178 catgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    |||||||||| || | |||| ||||| ||||||||||||||| |||||||| ||||| |||||    
T  26223257 catgtgggtaacatatattgaaaatggatcccacataaagtgatgagatccacatgaatttca 26223195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 357910 - 357833
Alignment:
Q  147 tctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgag 224  Q
    |||| |||| |||| |||||||| | ||||  |||| ||||| |||| ||||||||| | ||||||||||||||||||    
T  357910 tctatcactcacttttttattggatgaaatcaatgtaggtactacactttggaaatggaacccacataaagtggtgag 357833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 8700200 - 8700232
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacact 155  Q
    ||||||||||||| |||||||||||||||||||    
T  8700200 gaggagtgttatggacactctctttctaacact 8700232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 9052087 - 9052119
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacact 155  Q
    ||||||||||||| |||||||||||||||||||    
T  9052087 gaggagtgttatggacactctctttctaacact 9052119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 42780755 - 42780803
Alignment:
Q  199 aaatgaatcccacataaagtggtgagatccgcatgagtttcactcaata 247  Q
    ||||| ||||||||||||||||||||| || |||| | |||||||||||    
T  42780755 aaatggatcccacataaagtggtgagacccacatgggattcactcaata 42780803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 7447695 - 7447613
Alignment:
Q  166 ttgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttcactcaatag 248  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||| ||||| ||||||    
T  7447695 ttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgagacccacatgagcttcacccaatag 7447613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 32439504 - 32439586
Alignment:
Q  142 ctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgag 224  Q
    |||| ||||||||| |||   ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  32439504 ctctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgag 32439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 30480035 - 30479909
Alignment:
Q  123 gaggagtgttatgtacactctctttctaacacttacttgtttattgggttaaattcatgtgggtaccacacattgga-aatgaatcccacataaagtggt 221  Q
    |||||||||||| ||| |||||||||||| |||||||  |||||| ||| | ||||||||||||| ||||| || || | || |||||||||||||||||    
T  30480035 gaggagtgttatttacgctctctttctaatacttactcttttatttggtaatattcatgtgggtatcacacttttgatactggatcccacataaagtggt 30479936  T
Q  222 gagatccgcatgagtttcactcaatag 248  Q
     ||| || |||  |||| |||||||||    
T  30479935 aagacccacatatgttttactcaatag 30479909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 17221643 - 17221582
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgag 224  Q
    ||||||| | |||||||||| ||||||| |||||| ||||  ||||||||||||||||||||    
T  17221643 ttattggatgaaattcatgtaggtaccatacattgaaaatagatcccacataaagtggtgag 17221582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 714 - 791
Alignment:
Q  163 ttattgggttaaattcatgtgggtaccacacattggaaatgaatcccacataaagtggtgagatccgcatgagtttca 240  Q
    |||||| || |||||||||||| |||||||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  714 ttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University