View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19477_high_6 (Length: 451)

Name: NF19477_high_6
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19477_high_6
NF19477_high_6
[»] chr1 (14 HSPs)
chr1 (15-440)||(15035368-15035793)
chr1 (25-291)||(14534449-14534715)
chr1 (15-291)||(14502042-14502318)
chr1 (57-291)||(14524472-14524706)
chr1 (281-440)||(14502740-14502899)
chr1 (15-108)||(15015895-15015988)
chr1 (15-254)||(14465938-14466174)
chr1 (25-200)||(15000899-15001074)
chr1 (281-434)||(14523897-14524050)
chr1 (25-254)||(14480855-14481084)
chr1 (31-108)||(15009508-15009585)
chr1 (31-108)||(15030606-15030683)
chr1 (31-102)||(15023625-15023696)
chr1 (352-411)||(14534329-14534388)
[»] scaffold0400 (2 HSPs)
scaffold0400 (57-440)||(10881-11264)
scaffold0400 (18-229)||(5346-5557)
[»] scaffold0365 (2 HSPs)
scaffold0365 (57-440)||(11524-11907)
scaffold0365 (18-229)||(5990-6201)
[»] chr7 (3 HSPs)
chr7 (40-107)||(16023082-16023149)
chr7 (40-107)||(16101174-16101241)
chr7 (40-107)||(16170852-16170919)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Original strand, 15035368 - 15035793
Alignment:
Q  15 tgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||    
T  15035368 tgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccgaaattgaaa 15035467  T
Q  115 agtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactct 214  Q
    ||||||||||||||  ||||||||||||||||||| || ||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  15035468 agtttagttttaagcagcaactccttctacggtgtagttccacaccatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactct 15035567  T
Q  215 ctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaa 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15035568 ctggtaccattcccaataccattggtaatttgtacaaactatcctatcttgatctcagctttaattatctcaccgggtctatctcaatttctataggaaa 15035667  T
Q  315 gttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagatctt 414  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  15035668 gttggccaaaataaaaaatctcatgttacattcgaatcaactttttggccagattcctcgtgaaattgggaatttggtcaacctccagagactatatctt 15035767  T
Q  415 ggaaataacagtctttctggcttcat 440  Q
    |||||||||||||||| |||||||||    
T  15035768 ggaaataacagtctttttggcttcat 15035793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 25 - 291
Target Start/End: Complemental strand, 14534715 - 14534449
Alignment:
Q  25 tcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttt 124  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  | | ||||||||    
T  14534715 tcaaagtccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttctcatcacttacaaaaatccacactttagttt 14534616  T
Q  125 taagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccat 224  Q
    |||    ||||| ||| ||||| ||||| ||| || ||||||| | |||||| | |||| ||||||||||||||||| | ||  | ||||||||||||||    
T  14534615 taacaaacaacttcttgtacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttgtcagttaacaatctctctggtaccat 14534516  T
Q  225 tcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatctcactggg 291  Q
    |||||||| ||||||||||||||| ||| |||| |||||||||||||| || |||||||||||||||    
T  14534515 tcccaatagcattggtaatttgtcaaaaatatcttatcttgatctcagtttcaattatctcactggg 14534449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 14502042 - 14502318
Alignment:
Q  15 tgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaa 114  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |        
T  14502042 tgataatgattcaaaatccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttatcatcacttccaaaaatccgc 14502141  T
Q  115 agtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactct 214  Q
    |  ||||||||||    |||||| ||||| || | ||| ||| || ||||||| |||||||| || ||||| ||||||||||||||||||||| | ||||    
T  14502142 accttagttttaaaaaacaactcattctatggagctgttccacaccatattggagtgatgtcaaacctagacactcttgatttgtcactaaataatctct 14502241  T
Q  215 ctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatctcactggg 291  Q
    |||||| ||||||||| |   |||||||||||||||||||||| |||||||||||||| || |||||||||| ||||    
T  14502242 ctggtaacattcccaaaagtgttggtaatttgtccaaactatcttatcttgatctcagtttcaattatctcattggg 14502318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 57 - 291
Target Start/End: Complemental strand, 14524706 - 14524472
Alignment:
Q  57 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 156  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||| || ||||| |||    
T  14524706 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctatggagttgttcca 14524607  T
Q  157 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactat 256  Q
     || |||||||  | |||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  14524606 caccatattggtctaatgtgcaatctagacactcttgatttgtcactaaataaactctctggtagcattcacaatagcattggtaatttgtcaaaactat 14524507  T
Q  257 cgtatcttgatctcagctttaattatctcactggg 291  Q
    | ||||||||||| ||||| |||||||||||||||    
T  14524506 cctatcttgatcttagcttcaattatctcactggg 14524472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 281 - 440
Target Start/End: Original strand, 14502740 - 14502899
Alignment:
Q  281 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 380  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||| |||||||    ||| |||||||||||||| ||||||| ||||||| ||||||    
T  14502740 atctcactgggtctatccctatttctataggaatgttggccaatatatcaaatctttttttatattccaatcaacttattggccaaattcctcgtgaaat 14502839  T
Q  381 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 440  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||  ||||||||||||||    
T  14502840 tgggaatttggtcaacctccaaagactatatcttggaaataacaacctttctggcttcat 14502899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 15015895 - 15015988
Alignment:
Q  15 tgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  15015895 tgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaa 15015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 14465938 - 14466174
Alignment:
Q  15 tgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaa 114  Q
    ||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |  ||    
T  14465938 tgatgatgaatcaaaatcaatctacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccaaaaatccaa 14466037  T
Q  115 agtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactct 214  Q
       |||||||| ||   |||||||||||| || ||| | |||    || |||| |||| |||||||||||| ||| |||| ||||||   ||||||||||    
T  14466038 gaattagttttgagaaacaactccttctatggagttattcca---tattttggtgtgaagtccaatctagatactattgagttgtcatataatgaactct 14466134  T
Q  215 ctggtaccattcccaataccattggtaatttgtccaaact 254  Q
    |||||   ||||||| ||||||||||  | ||||||||||    
T  14466135 ctggtcatattcccagtaccattggttttctgtccaaact 14466174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 15000899 - 15001074
Alignment:
Q  25 tcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttt 124  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |  | |  |||||||    
T  15000899 tcaaaatccatcaacatgataaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttacaaaaatccacaccttagttt 15000998  T
Q  125 taagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtc 200  Q
    |||    ||||| |||  |||| ||||| ||| || ||||||| | |||||| | |||| ||||||||||||||||    
T  15000999 taacaaacaacttcttgcacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttgtc 15001074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 434
Target Start/End: Complemental strand, 14524050 - 14523897
Alignment:
Q  281 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 380  Q
    ||||||||||||| ||||| | |||||||||||| ||| |||| ||| || ||||| ||||| |   ||| ||||||||||||||||||||||  |||||    
T  14524050 atctcactgggtcaatctctacttctataggaaaattgaccaatatatcatatctccagttataccacaaccaactttttggccacattcctcgcgaaat 14523951  T
Q  381 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctgg 434  Q
    ||||||||| ||||||||| ||| |||  |||||||| |||| | |||||||||    
T  14523950 tgggaatttggtcaacctcaagaaactcaatcttggatataataatctttctgg 14523897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 14480855 - 14481084
Alignment:
Q  25 tcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttt 124  Q
    |||||||| || |||||| || ||||||||  | ||| |||||||||||| ||||||||||| ||||||||||||||| ||||| |  |||  |||||||    
T  14480855 tcaaaatctattaacaagatagatctcaccagttttgaactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccaaaaattagttt 14480954  T
Q  125 taagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccat 224  Q
    | ||   ||||| |||||| || ||| | ||| || ||||||| || |||||||||||  | ||||||||||| |||| |||  | || | ||| | |||    
T  14480955 tgagaaacaacttcttctatggagttattccataccatattggtgtaatgtccaatctgaacactcttgatttttcacaaaactacctatatggcagcat 14481054  T
Q  225 tcccaataccattggtaatttgtccaaact 254  Q
    |||||||| |||||||||| |||| |||||    
T  14481055 tcccaatagcattggtaatctgtcaaaact 14481084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15009508 - 15009585
Alignment:
Q  31 tccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| || |||||||||||| |||||    
T  15009508 tccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaa 15009585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15030606 - 15030683
Alignment:
Q  31 tccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| || |||||||||||| |||||    
T  15030606 tccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaa 15030683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 15023625 - 15023696
Alignment:
Q  31 tccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactt 102  Q
    |||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||| |||||||||||||||    
T  15023625 tccatcaacaaggtaaatctcaccaatattggattaaacggtactcttcaaagtctcaatttctcatcactt 15023696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 14534388 - 14534329
Alignment:
Q  352 caactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagat 411  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||    
T  14534388 caacttattggccacattcctcgtgaaattgggaatttggtcaaccttgagagactagat 14534329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 57 - 440
Target Start/End: Original strand, 10881 - 11264
Alignment:
Q  57 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 156  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||  || ||||| |||    
T  10881 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 10980  T
Q  157 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactat 256  Q
     |  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  10981 catcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactat 11080  T
Q  257 cgtatcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaact 356  Q
    | |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11081 cctatcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaact 11180  T
Q  357 ttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 440  Q
    ||| ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11181 tttcggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat 11264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 5346 - 5557
Alignment:
Q  18 tgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagt 117  Q
    |||||| |||||||| |||  |||| ||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |    |      
T  5346 tgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatc 5445  T
Q  118 ttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 217  Q
    ||||||||||    ||| ||||| ||||| ||||| ||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||    
T  5446 ttagttttaaaaaacaattccttttacggagttgttcctcaccatattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctg 5545  T
Q  218 gtaccattccca 229  Q
    ||| ||||||||    
T  5546 gtaacattccca 5557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 57 - 440
Target Start/End: Original strand, 11524 - 11907
Alignment:
Q  57 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 156  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||  || ||||| |||    
T  11524 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 11623  T
Q  157 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactat 256  Q
     |  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  11624 catcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactat 11723  T
Q  257 cgtatcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaact 356  Q
    | |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11724 cctatcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaact 11823  T
Q  357 ttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 440  Q
    ||| ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11824 tttcggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat 11907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 5990 - 6201
Alignment:
Q  18 tgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagt 117  Q
    |||||| |||||||| |||  |||| ||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |    |      
T  5990 tgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatc 6089  T
Q  118 ttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 217  Q
    ||||||||||    ||| ||||| ||||| ||||| ||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||    
T  6090 ttagttttaaaaaacaattccttttacggagttgttcctcaccatattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctg 6189  T
Q  218 gtaccattccca 229  Q
    ||| ||||||||    
T  6190 gtaacattccca 6201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 16023082 - 16023149
Alignment:
Q  40 aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 107  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16023082 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16023149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 16101174 - 16101241
Alignment:
Q  40 aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 107  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16101174 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16101241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 16170852 - 16170919
Alignment:
Q  40 aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 107  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16170852 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16170919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University