View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_12 (Length: 377)
Name: NF19477_low_12
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 153 - 370
Target Start/End: Complemental strand, 47198696 - 47198479
Alignment:
| Q |
153 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
252 |
Q |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47198597 |
T |
|
| Q |
253 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198596 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
47198497 |
T |
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| Q |
353 |
attgcatagcctttgctt |
370 |
Q |
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|||||||||||||||||| |
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| T |
47198496 |
attgcatagcctttgctt |
47198479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 169 - 370
Target Start/End: Complemental strand, 47186141 - 47185940
Alignment:
| Q |
169 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
268 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
|
| Q |
269 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
368 |
Q |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47185942 |
T |
|
| Q |
369 |
tt |
370 |
Q |
| |
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|| |
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| T |
47185941 |
tt |
47185940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 47198830 - 47198753
Alignment:
| Q |
19 |
aaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198830 |
aaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
47198753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 47186291 - 47186214
Alignment:
| Q |
19 |
aaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
96 |
Q |
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| T |
47186291 |
aaacctcttccagaaccaatgttgtttccatactttctcagccatatcttcaatgggtatattctttgtctctggaat |
47186214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
233 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
315 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
185 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
284 |
Q |
| |
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||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
|
| Q |
285 |
accaaccaagtggaccccatgaccatgcaaa |
315 |
Q |
| |
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|||||| || |||||||| ||||| ||||| |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 748372 - 748443
Alignment:
| Q |
19 |
aaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctc |
90 |
Q |
| |
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||||||| |||||||||||||||||||||| ||| |||| | ||| |||||||| ||||| ||||| ||||| |
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| T |
748372 |
aaacctcttccagaaccaatgttgtttccatactctctcggtcatttcttcaattggtatgttcttggtctc |
748443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
263 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
362 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
363 |
ctttg |
367 |
Q |
| |
|
||||| |
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| T |
41414149 |
ctttg |
41414153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
236 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
315 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
270 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
315 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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