View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19477_low_16 (Length: 298)

Name: NF19477_low_16
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19477_low_16
NF19477_low_16
[»] scaffold0591 (1 HSPs)
scaffold0591 (14-281)||(5204-5471)
[»] chr8 (10 HSPs)
chr8 (14-282)||(28700827-28701095)
chr8 (14-281)||(28625813-28626080)
chr8 (14-282)||(28731418-28731686)
chr8 (14-282)||(28740357-28740625)
chr8 (14-268)||(28644307-28644561)
chr8 (14-282)||(28711729-28711997)
chr8 (14-282)||(28719076-28719344)
chr8 (14-282)||(28726718-28726986)
chr8 (14-282)||(28636573-28636841)
chr8 (14-122)||(28653259-28653367)
[»] chr6 (2 HSPs)
chr6 (124-257)||(29645808-29645944)
chr6 (14-59)||(29646012-29646057)
[»] chr7 (1 HSPs)
chr7 (124-251)||(49110063-49110190)


Alignment Details
Target: scaffold0591 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 5471 - 5204
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5471 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttcaatgaccaaacactttaa 5372  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5371 cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 5272  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccat 5204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28700827 - 28701095
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  28700827 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctacgaaatgatccaagcttttgttcatcttgaatgaccaaacactttaa 28700926  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28700927 cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 28701026  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28701027 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 28701095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 28625813 - 28626080
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  28625813 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatcaccaaacactttaa 28625912  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28625913 cacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 28626012  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28626013 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccat 28626080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28731418 - 28731686
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  28731418 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgaacaaacactttaa 28731517  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731518 cacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 28731617  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28731618 tgagcacctttaccagctttttgcaacacatcaaaaacaccaagctgacttgcagaatggagtaccatt 28731686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28740357 - 28740625
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  28740357 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgagcaaacactttaa 28740456  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28740457 cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatgggcagagagt 28740556  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28740557 tgagcatctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtcccatt 28740625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 28644307 - 28644561
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28644307 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaa 28644406  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28644407 cacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacacaatctcatcggcagagagt 28644506  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcag 268  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28644507 tgagcacctttaccagttttttgcaacacatcaaatacaccaagctgacttgcag 28644561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28711729 - 28711997
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||    
T  28711729 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaa 28711828  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||||||||||||||||||||    
T  28711829 cacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagt 28711928  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28711929 tgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccatt 28711997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28719076 - 28719344
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||    
T  28719076 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaa 28719175  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||||||||||||||||||||    
T  28719176 cacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagt 28719275  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28719276 tgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccatt 28719344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28726718 - 28726986
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  28726718 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgatcaaacactttaa 28726817  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||||||||||||||||||||    
T  28726818 cacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagt 28726917  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28726918 tgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccatt 28726986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 28636573 - 28636841
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28636573 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaa 28636672  T
Q  114 cacatcatgtgaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 213  Q
    ||||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28636673 cacatcatgggatgcaagaagagcaaggatgcgatccaacattttcggggcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt 28636772  T
Q  214 tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatt 282  Q
    |||||| |||| |||||||||||||| |||||||| |||||||||| | ||||||| || ||| |||||    
T  28636773 tgagcatcttttccagctttttgcaaaacatcaaaaacaccaagctcagttgcagattgtagtgccatt 28636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 28653259 - 28653367
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28653259 catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaa 28653358  T
Q  114 cacatcatg 122  Q
    |||||||||    
T  28653359 cacatcatg 28653367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 257
Target Start/End: Complemental strand, 29645944 - 29645808
Alignment:
Q  124 gaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgct---gcaagaaatacgcgacgcaatctcatcggcagagagttgagcac 220  Q
    ||||||||||||||||||||||||||||||||||||  ||| |  |||||| |   |   |||| ||| ||| | || || ||||| |||||||||||||    
T  29645944 gaggcaagaagagcaagaatgcgatccaacattttgaaagcttttggattgttaatgttggaaagacgggacacgatgtcgtcggccgagagttgagcac 29645845  T
Q  221 ctttaccagctttttgcaacacatcaaatacaccaag 257  Q
    ||||||| |||||||||||||| ||||| ||||||||    
T  29645844 ctttaccggctttttgcaacacttcaaaaacaccaag 29645808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 29646057 - 29646012
Alignment:
Q  14 catcagaattaggagcaaaaaacctagcaacaggagtcatactata 59  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||    
T  29646057 catcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 29646012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 49110063 - 49110190
Alignment:
Q  124 gaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagttgagcacctt 223  Q
    |||||||||||||||||||||||||| |||||||| || ||||| |||||| |||| || | ||| || || ||||||||||  || ||  ||| | ||     
T  49110063 gaggcaagaagagcaagaatgcgatctaacattttaggtgcatctggattggtgcaggagagacgtgaagcgatctcatcggatgaaagaggagtatctc 49110162  T
Q  224 taccagctttttgcaacacatcaaatac 251  Q
    ||||||||||||| || || ||||||||    
T  49110163 taccagctttttgtaagacttcaaatac 49110190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University