View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_18 (Length: 278)
Name: NF19477_low_18
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 35253218 - 35253505
Alignment:
| Q |
1 |
tatgtgaagctcacctgaagttggtcaataacaaccatagtcggagtatcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatc |
100 |
Q |
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| T |
35253218 |
tatgtgaagctcacctgaagttggtcaataacaaccatagtcggagtatcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatc |
35253317 |
T |
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| Q |
101 |
caggctgaaatctcactaggcttcctgtctgaaattcatttttatacaagtcattttactccgtgattctgttttgaatactataaaag----------- |
189 |
Q |
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| T |
35253318 |
caggctgaaatctcactaggcttcctgcctgaaattcatttttatacaagtcattttactctgtgattctgttttgaatactttaaaagatgagttttga |
35253417 |
T |
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| Q |
190 |
-----------atgagtttaagactaaccttaaattcgttaactatgacattcttatggagatcccatactttaattacatcacaggt |
266 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35253418 |
atactgcaaaaatgagtttaagactaaccttaaattcgttaactaagacattcttatggagatcccatactttaattacatcacaggt |
35253505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 35241041 - 35241135
Alignment:
| Q |
61 |
ataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttatacaagtcatt |
155 |
Q |
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| T |
35241041 |
ataacattttgattagctactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttatacaagtcatt |
35241135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 35283327 - 35283439
Alignment:
| Q |
49 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttataca |
148 |
Q |
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| T |
35283327 |
tcaagtatggtgataacattttgattagcgactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttacata |
35283426 |
T |
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| Q |
149 |
agtcattttactc |
161 |
Q |
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||||||| ||||| |
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| T |
35283427 |
agtcattgtactc |
35283439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 35277813 - 35277928
Alignment:
| Q |
49 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttat |
145 |
Q |
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| T |
35277813 |
tcaagtatggtaacaacattttgattagcaactgccaaaagcttcccagatccaggctgaaatctcactgggcatccaccttcctgaaattcatttttat |
35277912 |
T |
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| Q |
146 |
acaagtcattttactc |
161 |
Q |
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| T |
35277913 |
acaagtcattgtactc |
35277928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 35246664 - 35246773
Alignment:
| Q |
54 |
tatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaag |
150 |
Q |
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|||||| ||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
35246664 |
tatggtgataacattttgattagcaactgccaaatgcctcccagatccaggctgaaatctcactaggcttccacctgcctgcaattcatttttatacaag |
35246763 |
T |
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| Q |
151 |
tcattttact |
160 |
Q |
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||||| |||| |
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| T |
35246764 |
tcattgtact |
35246773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 35271129 - 35271242
Alignment:
| Q |
44 |
gagtatcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatt |
140 |
Q |
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|||||| || |||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||| | ||| ||| ||||||||||| |
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| T |
35271129 |
gagtattaaatatggttataacattttgattagcaactgccaaaaacgtcccagatccaggctgaaatctcacttgccttccaccttcctgaaattcatg |
35271228 |
T |
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| Q |
141 |
tttatacaagtcat |
154 |
Q |
| |
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|||||||||||||| |
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| T |
35271229 |
tttatacaagtcat |
35271242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 35286869 - 35286963
Alignment:
| Q |
61 |
ataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaagtc |
152 |
Q |
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||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||| | |||| |||||||||||||||||| ||||| |
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| T |
35286869 |
ataacattttgattagcaactgccaaaagcatcccagatacaggctgaaatctcacttggcctacacctgcctgaaattcatttttatataagtc |
35286963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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