View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_19 (Length: 260)
Name: NF19477_low_19
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 42242572 - 42242321
Alignment:
| Q |
1 |
tttaagttaataactacaatttataatgtaaatgaaataggcaaaccttccaatgttcatcaaatataaatatattgctagtatttaaacatccatcatt |
100 |
Q |
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| T |
42242572 |
tttaagttaataacta--atttataatgtaaatgaaataggcaaaccttccaatgttcatcaaatataaatatattgctagtatttaaacatccatcatt |
42242475 |
T |
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| Q |
101 |
tctattacaacatgttcaatggcaataatgtgttatttgagtgggnnnnnnnnntcgaagatgagattctcttgtaaaataaagctcta---gtctgcga |
197 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42242474 |
tctattacaacatgttcaatggcaataatttgttatttgagtgggaaaaaaaaatcgaagatgagattctcttgtaaaataaagctctagacgtctgcga |
42242375 |
T |
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| Q |
198 |
tgcttgaatctggccttttatttttcccatggcgtgattctttgttcctatgct |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42242374 |
tgcttgaatctggccttttatttttcccatggcgtgattctttgttcctttgct |
42242321 |
T |
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