View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19477_low_2 (Length: 614)
Name: NF19477_low_2
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 602
Target Start/End: Original strand, 35252636 - 35253218
Alignment:
| Q |
19 |
atcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtccagtaattaatacatcagaggcacctcctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252636 |
atcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtccagtaattaatacatcagaggcacctcctt |
35252735 |
T |
|
| Q |
119 |
tattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaaccacctcgtatac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252736 |
tattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaaccacctcgtatac |
35252835 |
T |
|
| Q |
219 |
ttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
35252836 |
ttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttactt-aacagagatatagatgggacttaatgatcataat |
35252934 |
T |
|
| Q |
319 |
agaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgattg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35252935 |
agaagcgcagggaagtgtttacctgaaaaccagcaacaactaagacgttagggtatcgaggatggaatatgacagactgaaacctcttcccgtttgattg |
35253034 |
T |
|
| Q |
419 |
atactcgaatatgcatcgtctgtccgaccagacacgtacttcatc-tcactcgacagaggcaatcatatttccagtgacatccaaacatatggaattgat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
35253035 |
atactcgaatatgcatcgtctgtccgaccagacacgtacttcatcttcact-gacagaggcaatcatattcccagtgacgtccaaacatatggaattgat |
35253133 |
T |
|
| Q |
518 |
gtctttgacgtgtccctaatatcgaatgagaatcagagtcatggtgcagtaataatagagtcatgatacacaacttatatatgat |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35253134 |
gtctttgacgtgtccctaatatcgaatgagaatcagagacacggtgcagtaataatagtatcatgatacacaacttatatatgat |
35253218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 35240384 - 35240900
Alignment:
| Q |
19 |
atcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtccagtaattaatacatcagaggcacctcctt |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35240384 |
atcttcaccacagaattactgctagctgatgcaatatcgaattcacttcgcgctgtagtagctgctagtccagtaattaatacatcagaggcatctcctt |
35240483 |
T |
|
| Q |
119 |
tattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaaccacctcgtatac |
218 |
Q |
| |
|
|| ||||| ||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35240484 |
tagtacgtatttccctggtctcaacagtcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaaccacctcgtatac |
35240583 |
T |
|
| Q |
219 |
ttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatc--ata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||| |
|
|
| T |
35240584 |
ttttatagttttaataggttcaactatgactgagtctaactg--taacctctgtaacatttacttaaacggagatatagatgggacacaacaatcatata |
35240681 |
T |
|
| Q |
317 |
atagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgat |
416 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
35240682 |
atagaagcagagggaagagtttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgat |
35240781 |
T |
|
| Q |
417 |
tgatactcgaatatgcatcgtctgtccgaccagacacgtacttcatc-tcactcgacagaggcaatcatatttccagtgacatccaaacatatggaattg |
515 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
35240782 |
tgatactcgaatatgcattgtccgtccgaccagacacgtacatcatcttcact-gacagaggcaatcatattcccagtgacatcccaacatatggaattt |
35240880 |
T |
|
| Q |
516 |
atgtctttgacgtgtcccta |
535 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
35240881 |
atgtctttgacgtgacccta |
35240900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 311 - 602
Target Start/End: Original strand, 35270789 - 35271086
Alignment:
| Q |
311 |
atcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccg |
410 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| | ||| |||||| || |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
35270789 |
atcataatggaagcggagggaagtgtttacctgaaaacaaccaataactaagacgttagggtatcgaggatggaatatgacggactgaaacctcttccca |
35270888 |
T |
|
| Q |
411 |
tttgattgatactcgaatatgca-tcgtctgt-----ccgaccagacacgtacttcatc-tcactcgacagaggcaatcatatttccagtgacatccaaa |
503 |
Q |
| |
|
|||||| ||||||| ||||| | || | | | ||| | |||||||| ||||| ||||| |||||||||||||||||| |||||| ||||| || |
|
|
| T |
35270889 |
tttgatggatactcatatatggactctttcataaaaactgacaaaacacgtacatcatcttcact-gacagaggcaatcatattcccagtggcatcccaa |
35270987 |
T |
|
| Q |
504 |
catatggaattgatgtctttgacgtgtccctaatatcgaatgagaatcagagtcatggtgcagtaataatagagtcatgatacacaacttatatatgat |
602 |
Q |
| |
|
||||| || || || ||||||||||||||||||| |||||||| ||||| |||||||| ||||||| | | ||||||||||||| |||||||||||| |
|
|
| T |
35270988 |
catatagacttaatttctttgacgtgtccctaattaggaatgagattcagattcatggtgaagtaatactggtgtcatgatacacagcttatatatgat |
35271086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 35245850 - 35246027
Alignment:
| Q |
21 |
cttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtccagtaattaatacatcagaggcacctccttta |
120 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||| |||||||||| ||||||| | ||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
35245850 |
cttcaccatagaatcagtgctagcggatgcaatatggaattcactttgcgccgttgaagctgctagtccagtaattgatatatcagaggcacttccttta |
35245949 |
T |
|
| Q |
121 |
ttacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatt |
198 |
Q |
| |
|
||| ||||| | | |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
35245950 |
ttaaatctttgcccgttctcaataatcaaccattccaagcactgcaataagttgtccgaagattatttacttaatatt |
35246027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 235 - 556
Target Start/End: Original strand, 35246229 - 35246556
Alignment:
| Q |
235 |
ggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgcagggaagt |
334 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||| || || ||||||||||| ||| ||| |||| |
|
|
| T |
35246229 |
ggttcaactatgactgagtctaagtgta--acctctgtaacagttacttaaatggagatatagatggcacacac-gatcataatagtagcagaggaaagt |
35246325 |
T |
|
| Q |
335 |
gtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgattgatactcgaatatgcat |
434 |
Q |
| |
|
||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||| | ||||| |||||| |||||| | |||||| |
|
|
| T |
35246326 |
atttacctgaaaaccaccaataactaagacgccagggtatcgaggatggaatatgacagactgaaacctgttcccatttgatggatacttatacatgcat |
35246425 |
T |
|
| Q |
435 |
cgtct---------gtccgaccagacacgtacttcatc-tcactcgacagaggcaatcatatttccagtgacatccaaacatatggaattgatgtctttg |
524 |
Q |
| |
|
|| | ||||||| |||||||| ||||| ||| | ||||||||||||||| || |||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
35246426 |
tgtttcaccataaaaaccgaccaaacacgtacatcatcttcagt-gacagaggcaatcattttaccagtgacatcccaacacatggaatagatgtctttg |
35246524 |
T |
|
| Q |
525 |
acgtgtccctaatatcgaatgagaatcagagt |
556 |
Q |
| |
|
|||||||||||| ||| |||| ||||||| |
|
|
| T |
35246525 |
gtgtgtccctaatagggaacgagattcagagt |
35246556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 227 - 594
Target Start/End: Original strand, 35286411 - 35286784
Alignment:
| Q |
227 |
ttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgc |
326 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||| ||||| |||||| |||| |||| | ||||| | | || | |||| |||||| ||||| | |
|
|
| T |
35286411 |
ttttaaaaggttcaactatgactgaggctaaatgta--acctcagtaacagttacataaaagtatatataaaagaaacaccatgaacataatggaagcac |
35286508 |
T |
|
| Q |
327 |
agggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgattgatactcga |
426 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| || ||| |||||||||||||||||||||| ||| |||||||||||| || ||| ||||||| |
|
|
| T |
35286509 |
agggaagagtttacctgaaaaccaccaacaactaagacgttacggtatcgaggatggaatatgacggacataaacatcttccctttcgatggatactcat |
35286608 |
T |
|
| Q |
427 |
atatgcatcgtctgtc---------cgaccagacacgtacttcatct-cactcgacagaggcaatcatatttccagtgacatccaaacatatggaattga |
516 |
Q |
| |
|
||| ||| ||| ||| || |||||||||||| ||||| |||| ||||||||| ||||| | |||||||||||| |||||| |||| | |
|
|
| T |
35286609 |
ataagcactgtccgtccatagaaagcgtccagacacgtacaccatctgcact-gacagaggcgatcatttgcccagtgacatcccaacataaggaacaaa |
35286707 |
T |
|
| Q |
517 |
tgtctttgacgtgtccctaatatcgaatgagaatcagagtcatggtgcagtaataatagagtcatgatacacaactta |
594 |
Q |
| |
|
| | ||||||||| |||||||| |||||||| ||||| ||||| || ||||||| || ||||||||||||||||| |
|
|
| T |
35286708 |
tatatttgacgtggccctaatagggaatgagattcagactcatgctgtagtaatacta-tttcatgatacacaactta |
35286784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 267 - 423
Target Start/End: Original strand, 35277398 - 35277554
Alignment:
| Q |
267 |
ctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacat |
366 |
Q |
| |
|
|||| ||||| | ||||||| |||||||||| | ||| | ||||||||||| ||||| ||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
35277398 |
ctctataacagtcacttaaaaggagatatagaagagacactatgatcataatggaagcagagggaagagtttacctgaaaaccgccaacaactaagacat |
35277497 |
T |
|
| Q |
367 |
tagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgattgatact |
423 |
Q |
| |
|
|| ||||| |||||||||||||||| |||||||| | |||||||||||| |||||| |
|
|
| T |
35277498 |
tacggtattgaggatggaatatgaccgactgaaaattattcccgtttgatggatact |
35277554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 35282967 - 35283089
Alignment:
| Q |
289 |
gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatat |
388 |
Q |
| |
|
|||||||||| | ||| | ||||||||||| ||||| ||| ||| |||||||||||| ||| |||||||| || ||| ||| ||||||||||||||| |
|
|
| T |
35282967 |
gagatatagaagagacaccatgatcataatggaagctgaggaaagagtttacctgaaatccactcacaactaagacgttacggtgtcgaggatggaatat |
35283066 |
T |
|
| Q |
389 |
gacagactgaaacatcttcccgt |
411 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
35283067 |
gacagactgaaacctcttcccgt |
35283089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 35270037 - 35270105
Alignment:
| Q |
137 |
tctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
205 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||| |||| ||||||||||| || ||||||||| |
|
|
| T |
35270037 |
tctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaa |
35270105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 424
Target Start/End: Original strand, 35237675 - 35237762
Alignment:
| Q |
337 |
ttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgattgatactc |
424 |
Q |
| |
|
|||||||||| ||| ||| ||||| |||||||||||| ||||||||| |||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
35237675 |
ttacctgaaatccaccaataactagtgcattagggtatctaggatggaagatgatggactgaaacctcttcccatttgattgatactc |
35237762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 35277094 - 35277159
Alignment:
| Q |
140 |
caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
205 |
Q |
| |
|
||||| |||||||||||| || ||||||||| |||| |||||||||||||||| | || ||||||| |
|
|
| T |
35277094 |
caagagtcaacaattccatgccctgcaataaattgtacacagattatttactttccatctatgcaa |
35277159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 35274830 - 35274873
Alignment:
| Q |
137 |
tctcaagaatcaacaattccaagcactgcaataagttgtccaca |
180 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
35274830 |
tctcaagaatcaacatttccaagcactgcaataaattgtacaca |
35274873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 35275093 - 35275139
Alignment:
| Q |
393 |
gactgaaacatcttcccgtttgattgatactcgaatatgcatcgtct |
439 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
35275093 |
gactgaaacctcttcccatttgatggatactcgtatatgcatcgtct |
35275139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 35282681 - 35282746
Alignment:
| Q |
140 |
caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
205 |
Q |
| |
|
||||| || ||||||||| |||||||||||| |||| ||||||||| || ||| | |||||||||| |
|
|
| T |
35282681 |
caagagtccacaattccatgcactgcaataaattgtacacagattagttgctttccatttatgcaa |
35282746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University