View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_22 (Length: 252)
Name: NF19477_low_22
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35969537 - 35969780
Alignment:
| Q |
1 |
ttgactctattagaatcaaggaaaatgaattagaggaaatgctcaagaatgaggaaatttgggcttagagagcaaaggctaagtggctggtgcatggtga |
100 |
Q |
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| T |
35969537 |
ttgactctattagaatcaaggaaaatgaattagagaaaatcctcaagaatgaggaaatttgggcttagagagcaaaggctaagtggctggtgcatggtga |
35969636 |
T |
|
| Q |
101 |
ctgaaatacaaagttttttcacattaaagcttttcaaagaaagaagaaaaaacactatcagacacataattgacccacaagaattgttgtttg--gaata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
35969637 |
ctgaaatacaaagttttttcacattaaagcttttcaaagaaaaaagaaaaaacactatcagacacataattgacccacaagaa--gttgtttggagaata |
35969734 |
T |
|
| Q |
199 |
atatcaacagaatccataatgtctttcttgattatattcatctcat |
244 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
35969735 |
atatcaacagaatccataatatctttcttgattatattcatgtcat |
35969780 |
T |
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