View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19477_low_24 (Length: 244)
Name: NF19477_low_24
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_24 |
 | |
|
| [»] scaffold0528 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31039461 - 31039234
Alignment:
| Q |
1 |
atagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039461 |
atagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtac |
31039362 |
T |
|
| Q |
101 |
tttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039361 |
tttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaa |
31039262 |
T |
|
| Q |
201 |
aaatcctctctgtcttgttgctaagaag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
31039261 |
aaatcctctctgtcttgttgctaagaag |
31039234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31052951 - 31052724
Alignment:
| Q |
1 |
atagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31052951 |
atagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtac |
31052852 |
T |
|
| Q |
101 |
tttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31052851 |
tttctaatcttctctattcatttgattgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaa |
31052752 |
T |
|
| Q |
201 |
aaatcctctctgtcttgttgctaagaag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
31052751 |
aaatcctctctgtcttgttgctaagaag |
31052724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 31048642 - 31048457
Alignment:
| Q |
43 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaag |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31048642 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctgttcatttgactgggaaatgcctgaag |
31048543 |
T |
|
| Q |
143 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31048542 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaag |
31048457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31071783 - 31071556
Alignment:
| Q |
1 |
atagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
31071783 |
atagatttaaaaggacaagatttcgagctgattccatttggctcggggcgaagagtttgccccggcttaaacatggcaattgctactgtggaccttgtac |
31071684 |
T |
|
| Q |
101 |
tttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaa |
200 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| | || |||| | |||||| | |||||| ||||||||||||| |
|
|
| T |
31071683 |
ttgctaatcttctctatttgtttgattgggaaatgcctgaaggagtaaagtgggaaaatatagacattgatggtcttccaggacttgttcaacacaagaa |
31071584 |
T |
|
| Q |
201 |
aaatcctctctgtcttgttgctaagaag |
228 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |
|
|
| T |
31071583 |
aaatcctctctgccttattgctaagaag |
31071556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 1 - 102
Alignment:
| Q |
127 |
tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga |
100 |
T |
|
| Q |
227 |
ag |
228 |
Q |
| |
|
|| |
|
|
| T |
101 |
ag |
102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University