View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_26 (Length: 229)
Name: NF19477_low_26
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 2892880 - 2893075
Alignment:
| Q |
16 |
atgaaatttcatgagataaaacataagacacaactaagcttcaactaaatggccttctctttcccttttgatacttgcagttcatatgaaataaaatgta |
115 |
Q |
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| T |
2892880 |
atgaaatttcatgagataaaacataagacacaactaagcttcaagtaaatggccttctccttcccttttgatacttgcagttcatatgaaataaaacgta |
2892979 |
T |
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| Q |
116 |
aaactattgggataaaattacatctcagtaaattccttactaaaacccaaaacagtctaattcctgactaactacattgtagtcttcactaacaca |
211 |
Q |
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| T |
2892980 |
aaactattgggataaaattacatctcagtaaattccttactaaaacccaaatcagtctaattcctgactaactacattgtagtcttcactaacaca |
2893075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 3157761 - 3157678
Alignment:
| Q |
118 |
actattgggataaaattacatctcagtaaattccttactaaaacccaaaacagtctaattcctgactaactacattgtagtctt |
201 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3157761 |
actattcggataaaattacatctcagtaaatttcttactaaaacccaaaacagtctaattcatgactaactacattgtagtctt |
3157678 |
T |
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