View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19477_low_3 (Length: 613)
Name: NF19477_low_3
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 603
Target Start/End: Original strand, 25670927 - 25671514
Alignment:
| Q |
16 |
caataagcagcagtgaaaccagcaattccagaagaaagatgaataacatagccaccagaataatcaataacaccccaatgataaagaaatccaccacccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25670927 |
caataagcagcagtgaaaccagcaattccagaagaaagatgaataacataaccaccagaataatcaatcacaccccaatgataaagaaatccaccacccc |
25671026 |
T |
|
| Q |
116 |
aaagactaaaagcaccaacagtataagaaaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671027 |
aaagactaaaagcaccaacagtataagaaaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaa |
25671126 |
T |
|
| Q |
216 |
caaaatcatagtaatagcagcaaaagtaaactgaaaataaacaagtgaagccataggnnnnnnnggttcttccataggtgtttcaatatcaacaccattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671127 |
caaaatcatagtaatagcagcaaaagtaaactgaaaataaacaagtgaagccataggaaaaaaaggttcttccataggtgtttcaatatcaacaccattc |
25671226 |
T |
|
| Q |
316 |
ttgtaatagtgagtacttgcaggtactttcgctctagcaacaagaaatttttgtcctaaagccggtgcacctttaccccagaacggtaaaagttcgtcac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
25671227 |
ttgtaatagtgagtacttgcaggtacttttgctctagcaacaagaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcac |
25671326 |
T |
|
| Q |
416 |
caaaagccattctataagcaacaagaacccaacagattaaaactgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671327 |
caaaagccattctataagcaacaagaacccaacagattaatactgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcac |
25671426 |
T |
|
| Q |
516 |
tatgcttgcatagagaattactagtcctggcatgctttgtaaaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671427 |
tatgcttgcatagagaattactagtcctggcatgctttgtaaaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
25671514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 47501731 - 47501661
Alignment:
| Q |
16 |
caataagcagcagtgaaaccagcaattccagaagaaagatgaataacatagccaccagaataatcaataac |
86 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| || ||||||||||| || |||| | |||||||||| |
|
|
| T |
47501731 |
caataagcagcagtaaaaccagcaacaccagcagagaggtgaataacatatcccccagcaaaatcaataac |
47501661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 5625138 - 5625394
Alignment:
| Q |
16 |
caataagcagcagtgaaaccagcaattccagaagaaagatgaataacatagccaccagaataatcaataacaccccaatgataaagaaatccaccacccc |
115 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
5625138 |
caataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaatccaccacccc |
5625237 |
T |
|
| Q |
116 |
aaagactaaaagcaccaacagtataagaaaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaa |
215 |
Q |
| |
|
| | |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||| || |
|
|
| T |
5625238 |
atatactaaaagcaccaacagtgtaagagaaaatgagccaaagaggtacaaaagccatccaagccctaatgttcattcttccaagaacagatccagctaa |
5625337 |
T |
|
| Q |
216 |
caaaatcatagtaatagcagcaaaagtaaactgaaaataaacaagtgaagccatagg |
272 |
Q |
| |
|
|||||| | |||||||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
5625338 |
caaaataacagtaatagcagcaaaattgaattgaaaataaacaagtgaagccatagg |
5625394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 357 - 603
Target Start/End: Original strand, 5625476 - 5625722
Alignment:
| Q |
357 |
aagaaatttttgtcctaaagccggtgcacctttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaagaacccaacagattaaa |
456 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| || || |||||||| |||||||||||||| | ||| | |||||||||||| |||| |
|
|
| T |
5625476 |
aagaaatttttgacctaatgaaggtgcacctttaccccaaaatggaaaaagttcatcaccaaaagccatacggtaacataaaagaacccaacatattagc |
5625575 |
T |
|
| Q |
457 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
556 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
5625576 |
actgatgcataagcataaagtgccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgta |
5625675 |
T |
|
| Q |
557 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
603 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5625676 |
gaccaactagggttgatgctgtcatttgccatgagttgtctcctttg |
5625722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 39726391 - 39726590
Alignment:
| Q |
16 |
caataagcagcagtgaaaccagcaattccagaagaaagatgaataacatagccaccagaataatcaataacaccccaatgata-aagaaatccaccaccc |
114 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| | |||||| ||||||||| |
|
|
| T |
39726391 |
caataagcagcggtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaa-ccaccaccc |
39726489 |
T |
|
| Q |
115 |
caaagactaaaagcaccaacagtataagaaaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagcca |
214 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||| | | |||||| || ||||| ||||||||| |||| |||||| || | | |||||||||||||| |
|
|
| T |
39726490 |
cacaaactaaaagcaccaatagtataagaaaaagttaaccaaagtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagcca |
39726589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 358 - 603
Target Start/End: Original strand, 39726730 - 39726975
Alignment:
| Q |
358 |
agaaatttttgtcctaaagccggtgcacctttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaag-aacccaacagattaaa |
456 |
Q |
| |
|
|||||||| || |||||||| || || |||||||||| || |||||||||| |||||||| | ||| ||||||| || | |||||||||||||| | |
|
|
| T |
39726730 |
agaaatttctggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcc-catgtaacccaacagattata |
39726828 |
T |
|
| Q |
457 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
556 |
Q |
| |
|
|| || || ||||| || || ||||||||||| || || || ||||||||||||||||||||||| ||||||| || |||||||||||||||||||| | |
|
|
| T |
39726829 |
accgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaa |
39726928 |
T |
|
| Q |
557 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
603 |
Q |
| |
|
||||| || || |||| | |||||||||||| ||||||||||||| |
|
|
| T |
39726929 |
ttccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
39726975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 512
Target Start/End: Original strand, 13350166 - 13350291
Alignment:
| Q |
387 |
tttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaagaacccaacagattaaaactgctgcaaaagcatatagtgccatgaaa |
486 |
Q |
| |
|
||||||||| || || |||||| |||||||| | |||||||||||| || ||||||||||| || || |||||| ||||| |||| |||||| |
|
|
| T |
13350166 |
tttaccccaaaatggaaaaagtgtatcaccaaatgacattctataagcccaaaaaacccaacagaaaaatacacatgcaaatgcatagagtgacatgaat |
13350265 |
T |
|
| Q |
487 |
gctgaattcactgcccatttcttttt |
512 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13350266 |
gctgaattcactgcccatttcttttt |
13350291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13349849 - 13349918
Alignment:
| Q |
16 |
caataagcagcagtgaaaccagcaattccagaagaaagatgaataacatagccaccagaataatcaataa |
85 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| | |||||| ||||| |||||||| ||||| |||| |
|
|
| T |
13349849 |
caataagcagcagtaaacccagcaaccccagaagacaaatgaatgacataaccaccagagtaatcgataa |
13349918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University