View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_4 (Length: 493)
Name: NF19477_low_4
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Complemental strand, 31727458 - 31726994
Alignment:
| Q |
11 |
catcatcatctggagttagaaatctattgccttgactaaaaatagttggggacgaacttccactgattgcatattgtcgccaatgtgtgtaatcattgtt |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
31727458 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgtt |
31727359 |
T |
|
| Q |
111 |
caccacatgaaagtatccgaacctgcatcagcaacatttgtgtagaaaaaatttcaaactgttaggaataagagtaaaaatatataacaaatggcaagta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727358 |
caccacatgaaagtatccgaacctgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataagagtaaaaatatataacaaatggcaagta |
31727259 |
T |
|
| Q |
211 |
gggcttaattattgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttg |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727258 |
gggcttaattactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttg |
31727159 |
T |
|
| Q |
311 |
catatttttgtcctcttcataggaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatcca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727158 |
catatttttgtcctcttcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatcca |
31727059 |
T |
|
| Q |
411 |
tgaacaacatcaatcaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagc |
475 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31727058 |
tgaacaacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagc |
31726994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Complemental strand, 39082835 - 39082357
Alignment:
| Q |
11 |
catcatcatctggagttagaaatctattgccttgactaaaaatagttggggacgaacttccactgattgcatattgtcgccaatgtgtgtaatcattgtt |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
39082835 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgtt |
39082736 |
T |
|
| Q |
111 |
caccacatgaaagtatccgaacctgcatcagcaacatttgtgtagaaaaaatttcaaactgttaggaataa--------------gagtaaaaatatata |
196 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
39082735 |
gaccacatgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatata |
39082636 |
T |
|
| Q |
197 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082635 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
39082536 |
T |
|
| Q |
297 |
gctatagtagcttgcatatttttgtcctcttcataggaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39082535 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaa |
39082436 |
T |
|
| Q |
397 |
cagccgttgatccatgaacaacatcaatcaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082435 |
cagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagc |
39082357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 39076048 - 39075949
Alignment:
| Q |
335 |
atcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccatca |
434 |
Q |
| |
|
|||| ||||||| || |||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| || |||||| |
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|
| T |
39076048 |
atcactatgacccaaaagcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaattaatccatca |
39075949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 39076255 - 39076217
Alignment:
| Q |
90 |
ccaatgtgtgtaatcattgttcaccacatgaaagtatcc |
128 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
39076255 |
ccaatgtgtgtagtcattgttcaccacatgaaaatatcc |
39076217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 472
Target Start/End: Original strand, 7593252 - 7593472
Alignment:
| Q |
252 |
taccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtcctcttcataggaatcaatatgaccaaaga |
351 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| |||||||| |||||| ||||||| | ||||| | | ||| |||||| |||| || || | |
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|
| T |
7593252 |
taccttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgtccttgtcttgtgtataagaatcactatgtcccaaaa |
7593351 |
T |
|
| Q |
352 |
gcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccatcaaaacaatttgacaagga |
451 |
Q |
| |
|
|||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||||||| |||||| ||||| || |
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|
| T |
7593352 |
gcataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccatcacgacaattagacaaaga |
7593451 |
T |
|
| Q |
452 |
acaatgatccacccaaatatg |
472 |
Q |
| |
|
||||||||| | ||||||||| |
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| T |
7593452 |
acaatgatcaatccaaatatg |
7593472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 7592262 - 7592294
Alignment:
| Q |
90 |
ccaatgtgtgtaatcattgttcaccacatgaaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
7592262 |
ccaatgtgtgtaatcattgttcaccacatgaaa |
7592294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 473
Target Start/End: Complemental strand, 43131565 - 43131344
Alignment:
| Q |
252 |
taccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtcctcttcataggaatcaatatgaccaaaga |
351 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| || |||||||| |||||| ||||||| || ||||| | ||| | |||| ||||||| || | |
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|
| T |
43131565 |
taccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttcttgtcttgagtataagtatcactatgacccaaaa |
43131466 |
T |
|
| Q |
352 |
gcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccatcaaaacaatttgacaagga |
451 |
Q |
| |
|
|||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||||||| ||| || ||||| || |
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|
| T |
43131465 |
gcataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatcattacagttagacaaaga |
43131366 |
T |
|
| Q |
452 |
acaatgatccacccaaatatga |
473 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
43131365 |
acaatgatccacccaaacatga |
43131344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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