View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19477_low_7 (Length: 444)
Name: NF19477_low_7
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 10465037 - 10464615
Alignment:
| Q |
17 |
acttatgagcccccgctagcacgtgaggatatgtttgttagttgcacaactatgttgatggtaatttcatannnnnnn-cataaggaactattcttatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10465037 |
acttatgagcccccgctagcacgtgaggatatgtttgttagtcacacaactatgttgatggtaatttcatattttttttcataaggaactattcttatac |
10464938 |
T |
|
| Q |
116 |
taattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10464937 |
taattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattcg |
10464838 |
T |
|
| Q |
216 |
atctcaatcgaaagaaacagagctgattattttttgaaaattattatgtgcagtttgtttgcatttacagggttgtatttggagctgattaagtctctgt |
315 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10464837 |
atctcaattgaaagaaaccgagctgattattttttgaaaattattatgtgcagttagtttgcatttacagagttgtatttggagctgattaagtctctgt |
10464738 |
T |
|
| Q |
316 |
taggggagtatttggtaactgttttttaatggcagctattttggtgtgtctcctgctgtttggattcgtacagctctgttggtgtgttctcaggggctgt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10464737 |
taggggagtatttggtaactgttttttaatggcagctattttggtgtgtctcctgctttttggattcgtacagctctgttggtgtgttctcaggggctgt |
10464638 |
T |
|
| Q |
416 |
ttttgatgcttggatattcttgg |
438 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
10464637 |
ttttgatgcttggatatgcttgg |
10464615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 43734689 - 43734267
Alignment:
| Q |
17 |
acttatgagcccccgctagcacgtgaggatatgtttgttagttgcacaactatgttgatggtaatttcatannnnnnn-cataaggaactattcttatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43734689 |
acttatgagcccccgctagcacgtgaggatatgtttgttagtcacacaactatgttgatggtaatttcatattttttttcataaggaactattcttatac |
43734590 |
T |
|
| Q |
116 |
taattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43734589 |
taattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattcg |
43734490 |
T |
|
| Q |
216 |
atctcaatcgaaagaaacagagctgattattttttgaaaattattatgtgcagtttgtttgcatttacagggttgtatttggagctgattaagtctctgt |
315 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43734489 |
atctcaattgaaagaaaccgagctgattattttttgaaaattattatgtgcagttagtttgcatttacagagttgtatttggagctgattaagtctctgt |
43734390 |
T |
|
| Q |
316 |
taggggagtatttggtaactgttttttaatggcagctattttggtgtgtctcctgctgtttggattcgtacagctctgttggtgtgttctcaggggctgt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43734389 |
taggggagtatttggtaactgttttttaatggcagctattttggtgtgtctcctgctttttggattcgtacagctctgttggtgtgttctcaggggctgt |
43734290 |
T |
|
| Q |
416 |
ttttgatgcttggatattcttgg |
438 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
43734289 |
ttttgatgcttggatatgcttgg |
43734267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 50673568 - 50673124
Alignment:
| Q |
17 |
acttatgagcccccgctagcacgtgaggatatgtttgttagttgcacaactatgttgatggtaatttcatannnnnnn--cataaggaactattcttata |
114 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50673568 |
acttatgagcctccgctagtacgtgaggatatgtttattagttacacaactatgttgatggtaatttcatatttttttttcataaggaactattcttata |
50673469 |
T |
|
| Q |
115 |
ctaattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattc |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
50673468 |
ctaattatttttcatcacacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgataaaaatattggagcattactttgaccttc |
50673369 |
T |
|
| Q |
215 |
gatctcaatcgaaagaaacagagctgattattttttgaaaattattatgtgcagtttgtttgcatttacagggttgtatttggagctgattaagtctctg |
314 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50673368 |
gatctcaatcgaaagaaacgaagctggttattttttgaaaattattatgtacagttagtttgcatttacagggttgtatttggagctgattaagtctctg |
50673269 |
T |
|
| Q |
315 |
ttaggggagtatttggtaactgttttttaa-------tggcagcta----------------ttttggtgtgtctcctgctgtttggattcgtacagctc |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
50673268 |
ttaggggagtatttggtaactgttttttaatggtggctggcagctattgagagtgattagaattttggtgt--ctcctgctgtttggattcgcacagctc |
50673171 |
T |
|
| Q |
392 |
tgttggtgtgttctcaggggctgtttttgatgcttggatattcttgg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50673170 |
tgttggtgtgttctcaggggctgtttttgatgcttggatatgcttgg |
50673124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 5911530 - 5911978
Alignment:
| Q |
17 |
acttatgagcccccgctagcacgtgaggatatgtttgttagttgcacaactatgttgatggtaatttcatannnnnnn----cataaggaactattctta |
112 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5911530 |
acttatgagcccccgctagcacgtgggggtatgtttgttagttacacaactatgttgatggtaatttcatttttttttttttcataaggaactattctta |
5911629 |
T |
|
| Q |
113 |
tactaattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacat |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5911630 |
tactaattatttttcatcacacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacct |
5911729 |
T |
|
| Q |
213 |
tcgatctcaatcgaaagaaacagagctgattattttttgaaaattattatgtgcagtttgtttgcatttacagggttgtatttggagctgattaagtctc |
312 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
5911730 |
tcgatctcaatcgaaagaaacggagctggttattttttgaaaattattatgtgcagttagtttgcatctacaaggttgtatttggagctgattaagtctc |
5911829 |
T |
|
| Q |
313 |
tgttaggggagtatttggtaactgttttttaatg-------gcagcta----------------ttttggtgtgtctcctgctgtttggattcgtacagc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5911830 |
tgttaggggagtatttggtaactgttttttaatggcggctggcagctactgagagtgattagaattttggtgtgtctcctgctgcttggattcgtacagc |
5911929 |
T |
|
| Q |
390 |
tctgttggtgtgttctcaggggctgtttttgatgcttggatattcttgg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5911930 |
tctgttggtgtgttctcaggggctgtttttgatgcttggatatgcttgg |
5911978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 27979119 - 27979398
Alignment:
| Q |
17 |
acttatgagcccccgctagcacgtgaggatatgtttgttagttgcacaactatgttgatggtaatttcatannnnnnn-cataaggaactattcttatac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27979119 |
acttatgagcccccgctagcacgtgagaatatgtttgttagttacacaactatgttgatggtaatttcatattttttttcataaggaactattcttatac |
27979218 |
T |
|
| Q |
116 |
taattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattcg |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27979219 |
taattatttttcatcacacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgaccttcg |
27979318 |
T |
|
| Q |
216 |
atctcaatcgaaagaaacagagctgattattttttgaaaattattatgtgcagtttgtttgcatttacagggttgtattt |
295 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
27979319 |
atctcaatcgaaagaaacggagctggttattttttgaaaattattatgtgcagttagtttgcatctacagggttgtattt |
27979398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 25862774 - 25863055
Alignment:
| Q |
17 |
acttatgagcccccgctagcacgtgaggatatgtttgttagttgcacaactatgttgatggtaatttcatannnnnnn-cataaggaactattcttatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25862774 |
acttatgagcccccgctagcacgtgaggttatgtttgttagtcacacaactatgttgatggtaatttcatattttttttcataaggaactattcttatac |
25862873 |
T |
|
| Q |
116 |
taattatttttcatcgcacaatcatgattctaattattttttgttattaatgtaggcaccttttgatgatacaaatattggagcattactttgacattcg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25862874 |
taattatttttcattgcacaatcatgattctaattattttttgttattaatgtagacaccttttgatgatacaaatattgaagcattactttgacattcg |
25862973 |
T |
|
| Q |
216 |
atctcaatcgaaagaaacagagctgattattttttgaaaattattatgtgcagtttgtttgcatttacagggttgtatttgg |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
25862974 |
atctcaatcgaaagaaacggagctgattattttttgaaaattattatgtgtagttagtttgcatttacagggttgtatttgg |
25863055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 323 - 432
Target Start/End: Original strand, 25863048 - 25863155
Alignment:
| Q |
323 |
gtatttggtaactgttttttaatggcagctattttggtgtgtctcctgctgtttggattcgtacagctctgttggtgtgttctcaggggctgtttttgat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25863048 |
gtatttggtaactgttttttaatggcagct--tttggtgtgtctcctgctgtttggattcgtacagctctgttggtgtgttctcaggggctgtttttgat |
25863145 |
T |
|
| Q |
423 |
gcttggatat |
432 |
Q |
| |
|
|||||||||| |
|
|
| T |
25863146 |
gcttggatat |
25863155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 48794319 - 48794365
Alignment:
| Q |
156 |
ttgttattaatgtaggcaccttttgatgatacaaatattggagcatt |
202 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
48794319 |
ttgttattaatgtaggcacctcttgacgatacaaatattggagcatt |
48794365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 17513687 - 17513643
Alignment:
| Q |
157 |
tgttattaatgtaggcaccttttgatgatacaaatattggagcat |
201 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
17513687 |
tgttattaacgtaggcaccctttgacgatacaaatattggagcat |
17513643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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