View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19477_low_8 (Length: 428)
Name: NF19477_low_8
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 41476717 - 41476313
Alignment:
| Q |
21 |
tttctctgctca-gagtcagaattttcctatcttcactgctctcgatgaattttccatttcagaactctcacactttatcactattagcttttttaacaa |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41476717 |
tttctctgctcaagagtcagaattttcctatcttcactgctctcgatgaattttccatttcagaactctcgcactttatcactattagcttttttaacaa |
41476618 |
T |
|
| Q |
120 |
tctgttttcttttaacaccactatcaagtactttcttatgaaggagcttattaagctttggatcttctgaacatccgtttgagatcatctcctcataaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41476617 |
tctgttttcttttaacaccactatcaagtactttcttatgaaagagcttatcaagctttggatcttctgaacatccgtttgagatcatctcctcataaaa |
41476518 |
T |
|
| Q |
220 |
atccctggcctttatgaaccaactgcatgtcacaaacccttcaaccatttttctgtaatgcatacagctgggcaccacatcatacttcttcatttctgcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41476517 |
atccctggcctttatgaaccaactgcatgtcacaaacccttcaaccatttttctgtaatgcatacagctgggcaccacatcatacttcttcatttctgcc |
41476418 |
T |
|
| Q |
320 |
caaactttcagtgcatttacaggttgcttcaactttaggaattttaccagaattataagaaatgaatccttatttggacccaaaccagaacctttcatct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41476417 |
caaactttcagtgcatttacaggttgcttcaactttaggaattttaccagaattataagaaatgaatccttatttggacccaaaccagaacctttcatct |
41476318 |
T |
|
| Q |
420 |
cactc |
424 |
Q |
| |
|
|||| |
|
|
| T |
41476317 |
tactc |
41476313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 10006589 - 10006728
Alignment:
| Q |
44 |
ttcctatcttcactgctctcgatgaattttccatttcagaactctcacactttatcactattagcttttttaacaatctgttttcttttaacaccactat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
10006589 |
ttcctatcttcactgctctcgatgaattttccatttcagaactctcgcactttttcactactagcctttttaacaatttgttttcttttaacaccgctat |
10006688 |
T |
|
| Q |
144 |
caagtactttcttatgaaggagcttattaagctttggatc |
183 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
10006689 |
caagtacttttttatgaatgagcttatttagctttggatc |
10006728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 9995634 - 9995767
Alignment:
| Q |
50 |
tcttcactgctctcgatgaattttccatttcagaactctcacactttatcactattagcttttttaacaatctgttttcttttaacaccactatcaagta |
149 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9995634 |
tcttcaccgctctcgatgaattttccatttcagaactctcgcactttatcactactagcctttttaacaatttgttttcttttaacaccactatcaagta |
9995733 |
T |
|
| Q |
150 |
ctttcttatgaaggagcttattaagctttggatc |
183 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
9995734 |
cttttttatgaatgagcttatttagctttggatc |
9995767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University