View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19477_low_9 (Length: 427)
Name: NF19477_low_9
Description: NF19477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19477_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 29787073 - 29786669
Alignment:
| Q |
8 |
ttctgcatatctcaacatattattgtttttgttcattatgcaagttttgtttcttttagtgatatttatttaggacctatttcaaacttaacctttattt |
107 |
Q |
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| T |
29787073 |
ttctgcatatttcaacatattattgtttttgttcattatgcaagttttgtttcttttagtgatatttatttaggacctatttcaaacttaacctttattt |
29786974 |
T |
|
| Q |
108 |
aggatcttttagctaatagttgtttaacctttatttggatggcatcaatatacattccataattgtgaaatcttgagttttcctatctgtcttttctctt |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29786973 |
aggatcttttagctaattgttgtttaacctttatttggatggcatcaatatacattccataattgtgaaatcttgagttttcctatctgtcttttctctt |
29786874 |
T |
|
| Q |
208 |
cctaattaatggaattaatatatccttctgtgtgttggaatggtgaaacaaatgaaacttgttttaataaacattcttgtgtacttgataattaatataa |
307 |
Q |
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| T |
29786873 |
cctaattaatggaattaatatatccttctgtgtgttggaatggtgaaacaaatgaaacttgttttaataaacattcttgtgtacttgataattaatataa |
29786774 |
T |
|
| Q |
308 |
ctaacttttcttagtcagcacattggcctagtagacaatctcctctagnnnnnnnggtgtaataagaaagatatttattctttccaaaatgtccttcata |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29786773 |
ctaacttttcttagtcagcacattggcctagtagacaatctcctctagtttttttggtgtaataagaaagatatttattctttccaaaatgtccttcata |
29786674 |
T |
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| Q |
408 |
aaaac |
412 |
Q |
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||||| |
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| T |
29786673 |
aaaac |
29786669 |
T |
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