View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19478_high_1 (Length: 386)
Name: NF19478_high_1
Description: NF19478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19478_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 28962901 - 28962530
Alignment:
| Q |
1 |
atgtcaaattcaccgtcaatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28962901 |
atgtcaaattcaccgtcaatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatcctagcaga |
28962802 |
T |
|
| Q |
101 |
gaatcaattttcttttactgctaaattttgaactgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28962801 |
gaatcaattttcttttactgctaaattttgaattgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgca |
28962702 |
T |
|
| Q |
201 |
acttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28962701 |
acttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcatt |
28962602 |
T |
|
| Q |
301 |
gaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccacaaaaaccgcc |
372 |
Q |
| |
|
||| |||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
28962601 |
gaatgtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccaccacaaaaaccgcc |
28962530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 164 - 369
Target Start/End: Complemental strand, 29002467 - 29002262
Alignment:
| Q |
164 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
263 |
Q |
| |
|
||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
|
| Q |
264 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
363 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |
|
|
| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
|
| Q |
364 |
aaaacc |
369 |
Q |
| |
|
|||||| |
|
|
| T |
29002267 |
aaaacc |
29002262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 29002619 - 29002550
Alignment:
| Q |
38 |
atacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaatttt |
111 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||| || || |||||||||| ||||||||||| |
|
|
| T |
29002619 |
atacaaacttatgaatatgttcaaatcatgtacctccaagtggtt----aaaatccttgcagtgaatcaatttt |
29002550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University