View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19478_high_3 (Length: 333)

Name: NF19478_high_3
Description: NF19478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19478_high_3
NF19478_high_3
[»] chr3 (25 HSPs)
chr3 (18-313)||(29031764-29032058)
chr3 (222-313)||(33689173-33689264)
chr3 (222-313)||(30734452-30734543)
chr3 (214-313)||(55223221-55223320)
chr3 (221-313)||(41752960-41753052)
chr3 (228-310)||(43139762-43139844)
chr3 (228-313)||(47492097-47492182)
chr3 (221-313)||(51046123-51046215)
chr3 (215-284)||(30734392-30734461)
chr3 (254-313)||(30476524-30476583)
chr3 (213-313)||(18321639-18321739)
chr3 (254-313)||(1801496-1801555)
chr3 (214-313)||(47677305-47677395)
chr3 (222-284)||(1801443-1801505)
chr3 (229-309)||(50524706-50524786)
chr3 (222-284)||(41753043-41753105)
chr3 (229-305)||(30580814-30580890)
chr3 (215-310)||(50549965-50550060)
chr3 (222-284)||(45103106-45103168)
chr3 (242-284)||(47492064-47492106)
chr3 (231-307)||(39057015-39057089)
chr3 (254-284)||(30476503-30476533)
chr3 (254-284)||(33689255-33689285)
chr3 (223-279)||(7977584-7977640)
chr3 (242-278)||(20286921-20286957)
[»] scaffold0586 (2 HSPs)
scaffold0586 (222-313)||(7097-7187)
scaffold0586 (226-284)||(7048-7106)
[»] chr8 (23 HSPs)
chr8 (221-313)||(35441019-35441111)
chr8 (221-313)||(5033157-5033249)
chr8 (221-313)||(8243438-8243530)
chr8 (221-313)||(33841641-33841733)
chr8 (214-313)||(34229630-34229729)
chr8 (222-310)||(5667094-5667182)
chr8 (222-313)||(8796419-8796510)
chr8 (215-313)||(4958590-4958687)
chr8 (221-313)||(10086753-10086845)
chr8 (221-295)||(2581821-2581895)
chr8 (222-284)||(5033240-5033302)
chr8 (254-310)||(39850984-39851040)
chr8 (221-313)||(45191177-45191269)
chr8 (254-313)||(6296634-6296693)
chr8 (222-284)||(33841588-33841650)
chr8 (222-284)||(35440966-35441028)
chr8 (229-281)||(10086839-10086891)
chr8 (221-284)||(5667176-5667239)
chr8 (225-284)||(8796501-8796560)
chr8 (221-284)||(22649841-22649904)
chr8 (215-298)||(43844534-43844617)
chr8 (270-313)||(34541853-34541896)
chr8 (222-251)||(34229744-34229773)
[»] chr4 (35 HSPs)
chr4 (221-313)||(51265441-51265533)
chr4 (228-313)||(23444319-23444404)
chr4 (221-313)||(6271698-6271790)
chr4 (222-313)||(26186066-26186155)
chr4 (221-313)||(30861824-30861916)
chr4 (213-313)||(35682154-35682254)
chr4 (242-313)||(47661859-47661930)
chr4 (254-313)||(40789208-40789267)
chr4 (228-293)||(3862616-3862681)
chr4 (228-293)||(3871373-3871438)
chr4 (217-313)||(47762600-47762696)
chr4 (222-277)||(30709986-30710041)
chr4 (254-313)||(42375039-42375098)
chr4 (254-313)||(53954639-53954698)
chr4 (254-313)||(55090046-55090105)
chr4 (222-284)||(35682245-35682307)
chr4 (228-284)||(47661921-47661977)
chr4 (257-313)||(52028581-52028637)
chr4 (254-313)||(47404635-47404694)
chr4 (222-284)||(6271781-6271843)
chr4 (222-284)||(42375089-42375151)
chr4 (222-284)||(53954689-53954751)
chr4 (231-284)||(23444275-23444328)
chr4 (229-284)||(44379934-44379989)
chr4 (229-279)||(5048884-5048934)
chr4 (222-284)||(51265524-51265586)
chr4 (222-274)||(2325069-2325121)
chr4 (274-314)||(24006119-24006159)
chr4 (212-259)||(25617968-25618015)
chr4 (242-281)||(25818390-25818429)
chr4 (274-313)||(50384155-50384194)
chr4 (254-284)||(50384134-50384164)
chr4 (254-284)||(52028628-52028658)
chr4 (254-287)||(31430490-31430523)
chr4 (257-313)||(38714855-38714911)
[»] chr1 (43 HSPs)
chr1 (221-313)||(29179647-29179739)
chr1 (221-313)||(37155042-37155134)
chr1 (221-313)||(48993967-48994059)
chr1 (222-313)||(9157307-9157398)
chr1 (215-313)||(36290457-36290555)
chr1 (228-313)||(44706834-44706919)
chr1 (221-313)||(5995365-5995457)
chr1 (222-313)||(17127614-17127705)
chr1 (222-313)||(1091594-1091685)
chr1 (222-313)||(32540798-32540889)
chr1 (254-313)||(46333996-46334055)
chr1 (215-313)||(4608986-4609084)
chr1 (222-301)||(21630039-21630118)
chr1 (254-313)||(29371397-29371456)
chr1 (254-313)||(34062238-34062297)
chr1 (215-284)||(29371447-29371516)
chr1 (254-313)||(741552-741611)
chr1 (222-284)||(17127561-17127623)
chr1 (232-310)||(45728294-45728372)
chr1 (222-284)||(48993914-48993976)
chr1 (254-310)||(33219602-33219658)
chr1 (221-281)||(46931993-46932053)
chr1 (221-309)||(48498411-48498499)
chr1 (254-313)||(15220840-15220899)
chr1 (231-296)||(28395643-28395708)
chr1 (257-313)||(38674555-38674609)
chr1 (228-284)||(15220890-15220946)
chr1 (232-284)||(32540755-32540807)
chr1 (254-313)||(8337901-8337960)
chr1 (229-284)||(29179601-29179656)
chr1 (222-277)||(31342260-31342315)
chr1 (254-312)||(49444964-49445020)
chr1 (222-284)||(5995448-5995510)
chr1 (215-251)||(4609099-4609135)
chr1 (254-310)||(5694942-5694998)
chr1 (257-313)||(47303427-47303483)
chr1 (212-284)||(49444900-49444972)
chr1 (222-281)||(46932064-46932122)
chr1 (254-305)||(48605005-48605056)
chr1 (210-252)||(9157412-9157454)
chr1 (254-284)||(46333975-46334005)
chr1 (254-284)||(48823914-48823944)
chr1 (228-312)||(19711231-19711313)
[»] chr7 (24 HSPs)
chr7 (221-311)||(41018280-41018370)
chr7 (221-313)||(11016865-11016957)
chr7 (221-313)||(38975801-38975893)
chr7 (221-305)||(45231908-45231992)
chr7 (224-313)||(30217504-30217592)
chr7 (221-313)||(34854745-34854837)
chr7 (254-311)||(42628324-42628381)
chr7 (221-313)||(4290541-4290633)
chr7 (254-313)||(7671961-7672020)
chr7 (243-310)||(22764753-22764820)
chr7 (228-313)||(27028843-27028928)
chr7 (254-311)||(29053366-29053423)
chr7 (221-313)||(15027538-15027630)
chr7 (222-281)||(11016951-11017010)
chr7 (222-280)||(4290628-4290686)
chr7 (222-284)||(42628374-42628436)
chr7 (229-312)||(41945859-41945942)
chr7 (228-290)||(27028731-27028793)
chr7 (257-313)||(48000769-48000825)
chr7 (221-284)||(48000690-48000753)
chr7 (222-281)||(48000819-48000878)
chr7 (254-306)||(10419487-10419539)
chr7 (244-284)||(15027621-15027661)
chr7 (228-284)||(38975884-38975940)
[»] chr5 (32 HSPs)
chr5 (221-313)||(19655154-19655246)
chr5 (212-313)||(16439125-16439226)
chr5 (221-313)||(291093-291185)
chr5 (222-310)||(12913800-12913888)
chr5 (242-313)||(29699384-29699455)
chr5 (215-313)||(3180110-3180207)
chr5 (221-310)||(19598328-19598417)
chr5 (254-313)||(3899868-3899927)
chr5 (254-313)||(16971173-16971232)
chr5 (222-284)||(2953269-2953331)
chr5 (228-282)||(13312267-13312321)
chr5 (222-284)||(16971223-16971285)
chr5 (222-284)||(29699446-29699508)
chr5 (222-287)||(2356348-2356412)
chr5 (257-313)||(38134423-38134479)
chr5 (254-313)||(28818946-28819005)
chr5 (222-284)||(3899918-3899980)
chr5 (222-284)||(19655237-19655299)
chr5 (224-284)||(12913882-12913942)
chr5 (254-313)||(16802473-16802532)
chr5 (208-281)||(291179-291252)
chr5 (213-282)||(32485630-32485699)
chr5 (229-313)||(30117878-30117962)
chr5 (274-313)||(2953239-2953278)
chr5 (254-313)||(26662428-26662487)
chr5 (254-313)||(26934023-26934082)
chr5 (228-287)||(30117831-30117890)
chr5 (222-284)||(2093934-2093996)
chr5 (212-281)||(1638444-1638513)
chr5 (242-279)||(7137748-7137785)
chr5 (242-278)||(1839988-1840024)
chr5 (228-284)||(28818996-28819052)
[»] chr2 (30 HSPs)
chr2 (221-313)||(16514420-16514512)
chr2 (221-313)||(29508741-29508833)
chr2 (215-287)||(32545864-32545936)
chr2 (254-313)||(2828613-2828672)
chr2 (254-313)||(2893992-2894051)
chr2 (254-313)||(6217274-6217333)
chr2 (254-313)||(14229403-14229461)
chr2 (242-313)||(15011297-15011368)
chr2 (254-313)||(38933616-38933675)
chr2 (213-311)||(24115908-24116006)
chr2 (223-284)||(6217222-6217283)
chr2 (244-313)||(6721970-6722039)
chr2 (215-284)||(14470582-14470651)
chr2 (228-284)||(14229356-14229412)
chr2 (255-311)||(14470644-14470700)
chr2 (254-310)||(29925623-29925679)
chr2 (228-310)||(9173034-9173116)
chr2 (222-284)||(16514503-16514565)
chr2 (222-284)||(38933666-38933728)
chr2 (222-271)||(45213892-45213941)
chr2 (229-284)||(33018624-33018679)
chr2 (262-308)||(1945461-1945507)
chr2 (254-311)||(37762053-37762110)
chr2 (222-281)||(6722033-6722092)
chr2 (228-279)||(32545789-32545840)
chr2 (254-313)||(37961735-37961794)
chr2 (254-284)||(2828663-2828693)
chr2 (254-284)||(15011359-15011389)
chr2 (222-284)||(24115999-24116061)
chr2 (228-284)||(29508693-29508750)
[»] chr6 (15 HSPs)
chr6 (214-313)||(17750892-17750990)
chr6 (228-313)||(24587464-24587549)
chr6 (222-284)||(17750981-17751043)
chr6 (228-313)||(551215-551300)
chr6 (254-305)||(31654334-31654385)
chr6 (254-313)||(10521899-10521958)
chr6 (254-313)||(12343129-12343188)
chr6 (242-313)||(13043474-13043545)
chr6 (231-284)||(12343179-12343232)
chr6 (222-287)||(24618598-24618663)
chr6 (262-310)||(24618654-24618702)
chr6 (221-284)||(24975748-24975811)
chr6 (254-287)||(10521878-10521911)
chr6 (222-252)||(2315406-2315436)
chr6 (228-284)||(13043536-13043592)
[»] scaffold0161 (2 HSPs)
scaffold0161 (221-306)||(27277-27362)
scaffold0161 (222-276)||(27217-27271)
[»] scaffold0016 (2 HSPs)
scaffold0016 (222-284)||(49700-49762)
scaffold0016 (254-313)||(49753-49812)
[»] scaffold0047 (2 HSPs)
scaffold0047 (254-313)||(63786-63845)
scaffold0047 (254-284)||(63836-63866)
[»] scaffold0180 (1 HSPs)
scaffold0180 (224-284)||(19121-19181)
[»] scaffold1033 (1 HSPs)
scaffold1033 (277-313)||(2265-2301)
[»] scaffold1029 (1 HSPs)
scaffold1029 (277-313)||(2265-2301)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 29032058 - 29031764
Alignment:
Q  18 atgaaggcgttgattccagtatatttattggttttatagttgagtacagtccaaaataaagtttgttaggaaacatatttctgtcagatcgatgaaacat 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29032058 atgatggcgttgattccagtatatttattggttttatagttgagtacagtccaaaataaagtttgttaggaaacatatttctgtcagatcgatgaaacat 29031959  T
Q  118 tttatctaccatttcgtcgctttgtgtctgtgactgtgggtgggtacccaagt--------cccccatgaaggatcaatgcatgtttagattgggtagat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||||||    
T  29031958 tttatctaccatttcgtcgctttgtgtctgtgactgtgggtgggtacccaagtccccaagtcccccatgaaggatcaatgcatgtttaggttgggtagat 29031859  T
Q  210 aaaatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcat 309  Q
    ||||||||||| |||||||||||||||||||||||         || ||||| |||| |||||||||||||| || ||||| ||||||||||||||||||    
T  29031858 aaaatggatagcacttgtgtgacatagagttaggt---------gatattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcat 29031768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 33689173 - 33689264
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  33689173 acttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 33689264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 30734543 - 30734452
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| ||||| ||| ||||||||||||||||||    
T  30734543 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtg 30734452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 55223221 - 55223320
Alignment:
Q  214 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||| |||||||||| | | ||| ||||||||| ||||||||||||||||||||||    
T  55223221 tggatagcacttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtg 55223320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 41752960 - 41753052
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||| || ||||| | ||||||||||||||||||||    
T  41752960 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtg 41753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 43139844 - 43139762
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    ||||||||||||| ||||||||||  ||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  43139844 gtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcatt 43139762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 47492182 - 47492097
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||| ||||||||||   | |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  47492182 gtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 47492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 51046215 - 51046123
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| | ||||||||  |||||||||||||||||||| || ||||||| ||||| |||||||||||||| |||||||    
T  51046215 tacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtg 51046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 30734392 - 30734461
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  30734392 ggatagaacttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgctt 30734461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 30476583 - 30476524
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  30476583 gacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 30476524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 18321639 - 18321739
Alignment:
Q  213 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgt 312  Q
    |||||||| ||||| |  |||||||||| ||||| ||||  |||||||| ||||||||||||||||| | || ||||||||||| ||||||| |||||||    
T  18321639 atggatagcacttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgt 18321738  T
Q  313 g 313  Q
    |    
T  18321739 g 18321739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 1801555 - 1801496
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  1801555 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 1801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 47677395 - 47677305
Alignment:
Q  214 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||||||||| |||||||||||          ||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  47677395 tggatagcacttgtgtgacatagagttgggtgacattgat---------caatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 47677305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 1801443 - 1801505
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||    
T  1801443 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 1801505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 50524706 - 50524786
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcat 309  Q
    ||||||||||||  |||| | ||| ||||||| ||||||| |||||||||||| || ||||| ||||||||||||||||||    
T  50524706 tgacatagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcat 50524786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 41753105 - 41753043
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| |||||||||||||  |||||||||  |||||||||||||||||||| ||||||||||    
T  41753105 acttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgctt 41753043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 30580890 - 30580814
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 305  Q
    ||||||||| || |||||||||   |||||||| |||||||||||||||| ||||| ||||| | ||||||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaa 30580814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 50549965 - 50550060
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    ||||| |||||| |||| ||| || | ||||| ||||  ||||||| ||||||||||| | ||||||||| ||||| |||||||||||||| ||||    
T  50549965 ggataatacttgagtgatataaagctgggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaaacatt 50550060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 45103106 - 45103168
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  || ||||  ||||||||||||||||||||||    
T  45103106 acttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgctt 45103168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 47492064 - 47492106
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  47492064 ggtgacattggtgacattggccaatcacaatgtcacaatgctt 47492106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 39057089 - 39057015
Alignment:
Q  231 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 307  Q
    |||||||||||||||||||||  ||||| || |||| |||||||||| |||  | ||| ||||||||||||||||||    
T  39057089 acatagagttaggtgacattggtgacatcggacaatgacaatgtcacgatg--tttgtgtttctctctttcacaagc 39057015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 30476503 - 30476533
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  30476503 gacattggccaatcacaatgtcacaatgctt 30476533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 33689285 - 33689255
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  33689285 gacattggccaatcacaatgtcacaatgctt 33689255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 7977640 - 7977584
Alignment:
Q  223 cttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaa 279  Q
    |||| |||||||||| || | ||||||||| || ||||||||| |||||||||||||    
T  7977640 cttgggtgacatagaatttgatgacattgatgatattggccaaccacaatgtcacaa 7977584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 20286921 - 20286957
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcaca 278  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  20286921 ggtgacattgatgacattggccaaccacaatgtcaca 20286957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 7187 - 7097
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  7187 acttgtgtgacatagagtt-ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 7097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 7048 - 7106
Alignment:
Q  226 gtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||||| ||||||||||  || ||| ||||||||||||||||||||||||    
T  7048 gtgtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgctt 7106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 35441111 - 35441019
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  35441111 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 35441019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 5033157 - 5033249
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  5033157 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5033249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 8243530 - 8243438
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  ||| |||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  8243530 tacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 8243438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 33841733 - 33841641
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  ||||||| ||||||| |||| |||||||||| ||||| ||||||||||||||||||||||    
T  33841733 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 33841641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 34229630 - 34229729
Alignment:
Q  214 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||||||||| |||||||||   |||||  | |||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  34229630 tggatagcacttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtg 34229729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 5667094 - 5667182
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    ||||| ||||||||||||| | ||||||||  |||||||| |||||||||||||||||||||| | ||| |||||||||||||||||||    
T  5667094 acttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcatt 5667182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 8796419 - 8796510
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| ||||||||||||||||||| |||   || ||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  8796419 acttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtg 8796510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 4958590 - 4958687
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| |||||||||||||||| || | ||| ||||| ||||||||||||||||||||||| |||| || ||||| ||||||||||||||| ||||||    
T  4958590 ggatagcacttgtgtgacatagaatttg-tgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtg 4958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 10086753 - 10086845
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| |||||||||| || |||||||||   |||||||| |||||||||||||| |||| || ||||| |||||||||||||| |||||||    
T  10086753 tacttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtg 10086845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 2581821 - 2581895
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctc 295  Q
    |||||| |||||||||| || ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||    
T  2581821 tacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 5033302 - 5033240
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  5033302 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 5033240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 39850984 - 39851040
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||    
T  39850984 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcatt 39851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 45191269 - 45191177
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| | ||| ||||  ||||||| ||||||| ||||| |||||| || ||||| ||||||||||| ||||||||||    
T  45191269 tacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtg 45191177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 6296634 - 6296693
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  6296634 gacattgaccaatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtg 6296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 33841588 - 33841650
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  ||||||| ||||||||| |||||||||||||    
T  33841588 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgctt 33841650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 35440966 - 35441028
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||| ||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  35440966 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 35441028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 10086891 - 10086839
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    |||||||||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 10086839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 5667239 - 5667176
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| ||||||||||||| | ||||||||  ||||||||||||| ||||||||| |||||||    
T  5667239 tacttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgctt 5667176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 8796560 - 8796501
Alignment:
Q  225 tgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||| ||||||| ||||  ||||||| ||||||| |||||||||||||||    
T  8796560 tgtgtgacatagagctaggtgatattggtgacattgaccaatcaaaatgtcacaatgctt 8796501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 22649841 - 22649904
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| |||||||||||||  |||||||||  ||||||||| |||||||||| ||||||||||    
T  22649841 tacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgctt 22649904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 43844617 - 43844534
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctct 298  Q
    |||||| | ||| ||||||||||||| | ||||||||  || ||||  |||||||||||||||||||||| ||||| |||||||    
T  43844617 ggatagcaattgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctct 43844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 34541896 - 34541853
Alignment:
Q  270 aatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtg 34541853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 34229773 - 34229744
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattg 251  Q
    ||||||||||||||||||||||||||||||    
T  34229773 acttgtgtgacatagagttaggtgacattg 34229744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 51265441 - 51265533
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  51265441 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 51265533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 23444404 - 23444319
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  23444404 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 23444319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 6271698 - 6271790
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||| ||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  6271698 tacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 6271790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 26186155 - 26186066
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||    
T  26186155 acttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgct--tgtgtttctctctttcacaagcattgtg 26186066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 30861916 - 30861824
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| | ||| ||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  30861916 tacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 30861824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 35682154 - 35682254
Alignment:
Q  213 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgt 312  Q
    |||| ||| ||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||| ||||| ||| |||||||||||||||||    
T  35682154 atgggtagcacttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgt 35682253  T
Q  313 g 313  Q
    |    
T  35682254 g 35682254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 47661859 - 47661930
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  47661859 ggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 47661930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 40789208 - 40789267
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  40789208 gacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 40789267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 3862681 - 3862616
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttc 293  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  3862681 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttttc 3862616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 3871438 - 3871373
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttc 293  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  3871438 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttttc 3871373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 47762600 - 47762696
Alignment:
Q  217 atagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||| ||||||||||| |  |||| |||   ||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  47762600 atagtatttgggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtg 47762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 30710041 - 30709986
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcac 277  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30710041 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcac 30709986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 42375039 - 42375098
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  42375039 gacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 42375098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 53954639 - 53954698
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||    
T  53954639 gacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtg 53954698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 55090105 - 55090046
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  55090105 gacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtg 55090046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 35682307 - 35682245
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||| |||||||||||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  35682307 acttatgtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgctt 35682245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 47661977 - 47661921
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  47661977 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 47661921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 52028581 - 52028637
Alignment:
Q  257 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  52028581 attggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 52028637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 47404694 - 47404635
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| ||||||||||| ||||||||||  |||| ||||||||||||||||||||||    
T  47404694 gacattggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtg 47404635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 6271843 - 6271781
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| |||||||||||||  |||| ||||  |||||||||||||||||||||||||||||||    
T  6271843 acttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgctt 6271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 42375151 - 42375089
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  |||||||  ||||||||||||||||||||||    
T  42375151 acttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgctt 42375089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 53954751 - 53954689
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||| |||||||||||||| ||||||||||  ||||||| ||||| |||||||||||||||||    
T  53954751 acttttgtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgctt 53954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 23444275 - 23444328
Alignment:
Q  231 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  23444275 acatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 23444328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 44379934 - 44379989
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||  ||||||||| |||||||||||||| | |||||||||||||||    
T  44379934 tgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgctt 44379989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 5048934 - 5048884
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaa 279  Q
    |||||||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  5048934 tgacatagagttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 51265586 - 51265524
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||| ||||||| ||||||||||  ||||||| ||||||| |||||||||||||||    
T  51265586 acttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgctt 51265524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 2325121 - 2325069
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgt 274  Q
    ||||| ||||||||||||| ||||||||||| ||||||| | |||||||||||    
T  2325121 acttgagtgacatagagtttggtgacattgatgacattgacaaatcacaatgt 2325069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 24006159 - 24006119
Alignment:
Q  274 tcacaatgcttatgtttttctctctttcacaagcattgtgt 314  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  24006159 tcacaatgtttatgtttctctctctttcacaagcattgtgt 24006119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 25617968 - 25618015
Alignment:
Q  212 aatggatagtacttgtgtgacatagagttaggtgacattgacgacatt 259  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  25617968 aatggataacacttgtgtgacatagagttgggtgacattgatgacatt 25618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 25818390 - 25818429
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  25818390 ggtgacattgatgacattggtcaatcacaatgtcacaatg 25818429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 50384194 - 50384155
Alignment:
Q  274 tcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  50384194 tcacaatgcttgtgtttctctctctttcacaagcattgtg 50384155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 50384134 - 50384164
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  50384134 gacattggccaatcacaatgtcacaatgctt 50384164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 52028658 - 52028628
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  52028658 gacattggccaatcacaatgtcacaatgctt 52028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 31430490 - 31430523
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatg 287  Q
    ||||||| ||||||||||||||||||||||||||    
T  31430490 gacattgaccaatcacaatgtcacaatgcttatg 31430523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 38714855 - 38714911
Alignment:
Q  257 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| |||  |||||||| | | |||||||||| |||||||    
T  38714855 attggccaatcacaatgtcataatatttatgtttctatttctttcacaaacattgtg 38714911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 29179739 - 29179647
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  29179739 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 29179647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 37155042 - 37155134
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  37155042 tacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtg 37155134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 48994059 - 48993967
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  48994059 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 48993967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 9157307 - 9157398
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||| ||||||||||   |||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  9157307 acttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtg 9157398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 36290555 - 36290457
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||| ||||||||||||| ||||||||||  | ||||| |||||||||||||||||||  || ||||| ||||||||||||||||||||||    
T  36290555 ggatagtacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtg 36290457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 44706919 - 44706834
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||    
T  44706919 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtg 44706834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 5995365 - 5995457
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| | ||||||||   ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  5995365 tacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5995457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 17127705 - 17127614
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| |||| ||||||||||||||||||   ||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  17127705 acttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 17127614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 1091685 - 1091594
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| ||||||||||||| ||||| ||||  ||| ||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  1091685 acttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 1091594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 32540889 - 32540798
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| |||||||||| || | ||||||||  ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  32540889 acttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtg 32540798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 46334055 - 46333996
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46334055 gacattgaccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtg 46333996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 4608986 - 4609084
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| |||||||||| || ||||| |||||||| |  ||||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  4608986 ggatagcacttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 4609084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 21630039 - 21630118
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttc 301  Q
    ||||| |||||||| |||| ||||||||||  ||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  21630039 acttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 29371397 - 29371456
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  29371397 gacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 29371456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 34062238 - 34062297
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  34062238 gacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtg 34062297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 29371516 - 29371447
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| ||||||||||||||||| ||||||||||||  || |||| |||||||||||||||||||||||    
T  29371516 ggatagcacttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgctt 29371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 741611 - 741552
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  741611 gacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 741552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 17127561 - 17127623
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||||||    
T  17127561 acttgtgtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgctt 17127623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 45728294 - 45728372
Alignment:
Q  232 catagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    ||||||||| ||||| ||||  || |||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcatt 45728372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 48993914 - 48993976
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  48993914 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 48993976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 33219602 - 33219658
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||||  |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  33219602 gacattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcatt 33219658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 46931993 - 46932053
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  46931993 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 46932053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 48498411 - 48498499
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcat 309  Q
    |||||| ||||||||||||| |||||||||   |||||||| |||||| |||  ||||||| || ||||| ||||||||||||||||||    
T  48498411 tacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcat 48498499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 15220840 - 15220899
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| ||||||| || ||||||||||| ||||| ||||||||||||||||||||||    
T  15220840 gacattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtg 15220899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 28395643 - 28395708
Alignment:
Q  231 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctct 296  Q
    ||||||||||  |||||||||  ||||||| ||||||||||||||||||||||| ||||| |||||    
T  28395643 acatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 38674609 - 38674555
Alignment:
Q  257 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||    
T  38674609 attggccaatcataatgtcacaatgct--tgtgtttctctctttcacaagcattgtg 38674555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 15220946 - 15220890
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||| ||||||||||  || |||||||||||||||| |||||||||||    
T  15220946 gtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgctt 15220890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 32540755 - 32540807
Alignment:
Q  232 catagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||| ||||||||||  | |||||||||||||||||||||||||||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgctt 32540807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 8337960 - 8337901
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| |||||||||||| ||||||| || ||||| |||||||||||||| |||||||    
T  8337960 gacattgaccaatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtg 8337901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 29179601 - 29179656
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||| ||||||||||  |||| || |||||||||||||||||||||||    
T  29179601 tgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgctt 29179656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 31342260 - 31342315
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcac 277  Q
    ||||| ||||||||||||| |||||||  || ||||||||||||||||||||||||    
T  31342260 acttgggtgacatagagttgggtgacaccgatgacattggccaatcacaatgtcac 31342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 49445020 - 49444964
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgt 312  Q
    |||||||||||||||||||| |||||||||  ||| ||||||||| |||||||||||||    
T  49445020 gacattggccaatcacaatgccacaatgct--tgtgtttctctctctcacaagcattgt 49444964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 5995510 - 5995448
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| | ||||||||  ||||||| |||||||||||| ||||||||||    
T  5995510 acttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgctt 5995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 4609135 - 4609099
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattg 251  Q
    |||||||||||||||||||||||||| ||||||||||    
T  4609135 ggatagtacttgtgtgacatagagttgggtgacattg 4609099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 5694998 - 5694942
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||||| |||| |||||||||||||  || ||||| |||||||||||||||||||    
T  5694998 gacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 47303427 - 47303483
Alignment:
Q  257 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||| ||||||||||||||| |||| || ||||| |||||||||||||| |||||||    
T  47303427 attgaccaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtg 47303483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 49444900 - 49444972
Alignment:
Q  212 aatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||| ||||| ||||||||||||| ||||||||||  ||||| |  |||||||||||| |||||||||    
T  49444900 aatgggtagcacttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgctt 49444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 46932122 - 46932064
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||    
T  46932122 acttgggtgacatagagtt-ggtgacattggtgacattgaccaatcacaatgccacaatg 46932064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 48605056 - 48605005
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 305  Q
    ||||||||||||| | |||||||||||||||  |||| ||||||||||||||    
T  48605056 gacattggccaattataatgtcacaatgcttgcgtttctctctctttcacaa 48605005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 9157454 - 9157412
Alignment:
Q  210 aaaatggatagtacttgtgtgacatagagttaggtgacattga 252  Q
    ||||||||||| ||||||||||||||||||| | |||||||||    
T  9157454 aaaatggatagcacttgtgtgacatagagttggttgacattga 9157412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 46333975 - 46334005
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  46333975 gacattggccaatcacaatgtcacaatgctt 46334005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 48823914 - 48823944
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  48823914 gacattggccaatcacaatgtcacaatgctt 48823944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 19711313 - 19711231
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgt 312  Q
    |||| ||| |||| ||||||||||   ||||||||  || ||||||||||||| ||||||  ||||||||||||||| |||||||    
T  19711313 gtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatg--tttctctctttcacatgcattgt 19711231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 41018370 - 41018280
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    |||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  41018370 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattg 41018280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 11016865 - 11016957
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  11016865 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 11016957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 38975801 - 38975893
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||   ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  38975801 tacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 38975893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 45231992 - 45231908
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 305  Q
    |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  45231992 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa 45231908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 30217592 - 30217504
Alignment:
Q  224 ttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||| | ||||||||| |||||| |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||    
T  30217592 ttgtgtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 34854837 - 34854745
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||| ||||||||||| ||||||| || ||||| | ||||||||||||||||||||    
T  34854837 tacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtg 34854745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 42628324 - 42628381
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  42628324 gacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattg 42628381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 4290541 - 4290633
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||| ||||  || ||||| ||||||||||| |||||||||  ||||| ||||||||||||||| ||||||    
T  4290541 tacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtg 4290633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 7672020 - 7671961
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  7672020 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 7671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 22764820 - 22764753
Alignment:
Q  243 gtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||||||  || ||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  22764820 gtgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 27028928 - 27028843
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||| || |||||  |||  |||||||| ||||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  27028928 gtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtg 27028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 29053423 - 29053366
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||    
T  29053423 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattg 29053366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 15027538 - 15027630
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| || ||||||||||   ||||||||  ||||||| |||||||||||  ||||||| || ||||| ||||||||||||||||||||||    
T  15027538 tacttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtg 15027630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 11017010 - 11016951
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    ||||| ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 11016951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 4290686 - 4290628
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaat 280  Q
    ||||| |||||||| |||| ||||||||||  |||||||||||||||||||||||||||    
T  4290686 acttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 42628436 - 42628374
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  || ||||||||||||||||||| ||||||||    
T  42628436 acttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgctt 42628374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 41945859 - 41945942
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgt 312  Q
    ||||||||| ||  |||||||||| |||||| | |||||| ||||||| |||| ||  |||||| |||||||||||||||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgt 41945942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 27028731 - 27028793
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgttt 290  Q
    |||||||| ||||  |||||||||  |||||||| |||||||||||||||||||||| |||||    
T  27028731 gtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgttt 27028793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 48000769 - 48000825
Alignment:
Q  257 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||| ||||||| || ||||| |||||||||||||  |||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtg 48000825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 48000690 - 48000753
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| ||||||| ||||| ||||||||||  |||||||  ||||||||||| ||||||||||    
T  48000690 tacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgctt 48000753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 48000878 - 48000819
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    ||||| || |||||||||| ||||||||||  ||||||| |||||||||||| |||||||    
T  48000878 acttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatg 48000819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 10419487 - 10419539
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 306  Q
    |||||||| |||||| ||||| ||||| ||| ||||| |||||||||||||||    
T  10419487 gacattggtcaatcataatgttacaatacttgtgtttctctctctttcacaag 10419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 15027661 - 15027621
Alignment:
Q  244 tgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgctt 15027621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 38975940 - 38975884
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||||||||||||||  |||||||  |||| | |||| ||||||||||    
T  38975940 gtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgctt 38975884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 19655154 - 19655246
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  19655154 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 19655246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 16439125 - 16439226
Alignment:
Q  212 aatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    ||||||||| |||||  ||| |||||||| ||| | ||||  |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  16439125 aatggatagcacttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattg 16439224  T
Q  312 tg 313  Q
    ||    
T  16439225 tg 16439226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 291093 - 291185
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| | ||| | |||||||||||| |||||||    
T  291093 tacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtg 291185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 12913800 - 12913888
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||||||||||| ||||  |||||||||  ||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||    
T  12913800 acttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcatt 12913888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 29699384 - 29699455
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  29699384 ggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 29699455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 3180207 - 3180110
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| |||||||| |||||||||| ||| ||||||  |||||||| ||||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  3180207 ggatagcacttgtgtcacatagagtt-ggtaacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 3180110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 19598328 - 19598417
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||| ||||||||||||| ||| ||||||  |||||||| ||||||||||  |||||||||| ||||| |||||||||||||||||||    
T  19598328 tacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 3899868 - 3899927
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  3899868 gacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 3899927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 16971173 - 16971232
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  16971173 gacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 16971232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 2953331 - 2953269
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  2953331 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgctt 2953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 13312267 - 13312321
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgc 282  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  13312267 gtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaatgc 13312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 16971285 - 16971223
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  16971285 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 16971223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 29699508 - 29699446
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||    
T  29699508 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgctt 29699446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 2356412 - 2356348
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 287  Q
    ||||||||||||||||||| | ||||||||  |||||||||||||||| |||||||||||||||||    
T  2356412 acttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgcttatg 2356348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 38134479 - 38134423
Alignment:
Q  257 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||    
T  38134479 attggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtg 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 28818946 - 28819005
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| |||||||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  28818946 gacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtg 28819005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 3899980 - 3899918
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||| ||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  3899980 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 3899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 19655299 - 19655237
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| |||||||||||||  |||||||||  ||||||| |||||||||||||||||||||||    
T  19655299 acttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgctt 19655237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 12913942 - 12913882
Alignment:
Q  224 ttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||||||| ||||||||||  || ||||| |||||||||||||| |||||||    
T  12913942 ttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgctt 12913882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 16802473 - 16802532
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||||| |||||  || ||||| ||||||||| ||||||||||||    
T  16802473 gacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtg 16802532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 291252 - 291179
Alignment:
Q  208 ataaaatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    |||||| || ||| ||||| |||| |||||||| ||||||||||  |||||||  |||||||||||||||||||    
T  291252 ataaaaggggtagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 32485699 - 32485630
Alignment:
Q  213 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgc 282  Q
    |||||||  |||||||||||| |||||| ||||||||||  |||||||  |||||||||| |||||||||    
T  32485699 atggataacacttgtgtgacacagagttgggtgacattggtgacattgatcaatcacaatatcacaatgc 32485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 30117962 - 30117878
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||| | ||||||||  || ||||| |||||| |||| |||||||||| ||||| ||||| ||||| || |||||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtg 30117878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 2953239 - 2953278
Alignment:
Q  274 tcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  2953239 tcacaatgcttgtgtttctctctctttcacaagcattgtg 2953278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 26662428 - 26662487
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||| ||| ||||| ||||| ||||| ||||||||| ||||||    
T  26662428 gacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtg 26662487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 26934023 - 26934082
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||| ||| ||||| ||||| ||||| ||||||||| ||||||    
T  26934023 gacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtg 26934082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 30117831 - 30117890
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 287  Q
    |||| |||||||| ||||||||||  || |||| |||||||||||||||||||| |||||    
T  30117831 gtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatg 30117890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 2093934 - 2093996
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||| ||||  |||||||  |||||||||||||| |||||||    
T  2093934 acttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgctt 2093996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 1638444 - 1638513
Alignment:
Q  212 aatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    ||||||||| ||||  |||| |||||||| ||||| |||   || |||||||||||||||||||||||||    
T  1638444 aatggatagcacttaggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatg 1638513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 7137785 - 7137748
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaa 279  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7137785 ggtgacattgacgacattggtcaaccacaatgtcacaa 7137748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 1839988 - 1840024
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcaca 278  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  1839988 ggtgacattgatgacattggccaaccacaatgtcaca 1840024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 28819052 - 28818996
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||  |||| ||||  |||||||| |||||| |||||||||||||||    
T  28819052 gtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgctt 28818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 16514420 - 16514512
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||| ||| || ||||||| ||||| ||||||||||||||||||||||    
T  16514420 tacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtg 16514512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 29508833 - 29508741
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| ||||||||||||| ||||| ||||  |||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||    
T  29508833 tacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtg 29508741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 32545936 - 32545864
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 287  Q
    |||||| ||||| |||||||||||||  |||||||||  ||||||||||||||| ||||||||||||||||||    
T  32545936 ggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgcttatg 32545864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 2828613 - 2828672
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  2828613 gacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtg 2828672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 2893992 - 2894051
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||    
T  2893992 gacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtg 2894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 6217333 - 6217274
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  6217333 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 6217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 14229461 - 14229403
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  14229461 gacattggc-aatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 14229403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 15011297 - 15011368
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||  || ||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  15011297 ggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 15011368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 38933616 - 38933675
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  38933616 gacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 38933675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 24115908 - 24116006
Alignment:
Q  213 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    |||||||| |||||||||| ||||||||  || ||||||   |||||||||||||||||||| ||||||| | |||||  | |||||||||||||||||    
T  24115908 atggatagcacttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattg 24116006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 6217222 - 6217283
Alignment:
Q  223 cttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 6217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 6721970 - 6722039
Alignment:
Q  244 tgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||  ||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||    
T  6721970 tgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtg 6722039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 14470582 - 14470651
Alignment:
Q  215 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| ||||||||||||||||||| ||||||||||  ||||||| |||||||||||||  ||||||||    
T  14470582 ggatagcacttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgctt 14470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 14229356 - 14229412
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  14229356 gtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgctt 14229412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 14470700 - 14470644
Alignment:
Q  255 acattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  14470700 acattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattg 14470644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 29925679 - 29925623
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||    
T  29925679 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcatt 29925623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 9173116 - 9173034
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    ||||||||||||| ||||||||||  || ||||||||||||||||| |||||||||| | ||| ||| ||||| | |||||||    
T  9173116 gtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcatt 9173034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 16514565 - 16514503
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||| ||||  ||||||| |||||||||||||||||||||||    
T  16514565 acttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgctt 16514503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 38933728 - 38933666
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||  ||| ||||||||||| |||||||||||||||    
T  38933728 acttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgctt 38933666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 45213941 - 45213892
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaa 271  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  45213941 acttgtgtgacatagagttgggtgacattgatgacattgaccaatcacaa 45213892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 33018679 - 33018624
Alignment:
Q  229 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgctt 33018624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 1945507 - 1945461
Alignment:
Q  262 ccaatcacaatgtcacaatgcttatgtttttctctctttcacaagca 308  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||||    
T  1945507 ccaatcacaatattacaatgcttaagtttttctctctttcacaagca 1945461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 37762110 - 37762053
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattg 311  Q
    ||||| || |||||||||| ||||||||||| ||||| | ||||||||||||||||||    
T  37762110 gacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattg 37762053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 6722092 - 6722033
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 281  Q
    ||||| ||||||||||||| | |||||||   || |||||||||||||||||||||||||    
T  6722092 acttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatg 6722033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 32545789 - 32545840
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaa 279  Q
    ||||||||||||||||||||||||  |||||||| ||| ||| |||||||||    
T  32545789 gtgacatagagttaggtgacattggtgacattggtcaaccacgatgtcacaa 32545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 37961735 - 37961794
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| || ||||||||| || |||| || ||||| ||||||||||||||||||||||    
T  37961735 gacattgaccgatcacaatgccataatgtttgtgtttctctctctttcacaagcattgtg 37961794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 2828693 - 2828663
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  2828693 gacattggccaatcacaatgtcacaatgctt 2828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 15011389 - 15011359
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  15011389 gacattggccaatcacaatgtcacaatgctt 15011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 24116061 - 24115999
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||||||||| |||| ||||   || ||||| ||||||||||||| ||||||||    
T  24116061 acttgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgctt 24115999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 29508693 - 29508750
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcac-aatgtcacaatgctt 284  Q
    ||||||||||||| ||||||||||  ||||||| |||||||| |||| ||||||||||    
T  29508693 gtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgctt 29508750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 17750892 - 17750990
Alignment:
Q  214 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||| ||||||||||||||||||| | ||||||||  |||||||| ||||||||||||||||||| || | ||| ||||||||||||||||||||||    
T  17750892 tggatagcacttgtgtgacatagagtt-gatgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtg 17750990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 24587464 - 24587549
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||||||||||| |||||||||   |||||||| |||||||||||||||||||||| ||||| || || ||||||||||||||||    
T  24587464 gtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtg 24587549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 17751043 - 17750981
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||    
T  17751043 acttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgctt 17750981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 551300 - 551215
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||| || | ||| ||||  |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  551300 gtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 31654334 - 31654385
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 305  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  31654334 gacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaa 31654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 10521958 - 10521899
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| |||||||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  10521958 gacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtg 10521899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 12343129 - 12343188
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||| | ||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  12343129 gacattagtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 12343188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 13043474 - 13043545
Alignment:
Q  242 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    ||||| |||| ||| ||||| |||||  ||||||||||||||| ||||| ||||||||||||||||||||||    
T  13043474 ggtgatattggcgatattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 13043545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 12343232 - 12343179
Alignment:
Q  231 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||| ||||| ||||  |||||||||||||||||||||||||||||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgctt 12343179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 24618598 - 24618663
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 287  Q
    ||||| ||||||||||||| ||||||||||  |||||||  |||||||||||||| ||||||||||    
T  24618598 acttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatg 24618663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 24618702 - 24618654
Alignment:
Q  262 ccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcatt 310  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  24618702 ccaatcacaatgtcacaatgcttgtgtttctctctctttcataagcatt 24618654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 24975748 - 24975811
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||| ||||||||||||| | ||||||||  |||||||| ||||||||||| ||||||||||    
T  24975748 tacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgctt 24975811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 10521878 - 10521911
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatg 287  Q
    ||||||||||||||||||||||||||||||||||    
T  10521878 gacattggccaatcacaatgtcacaatgcttatg 10521911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 2315436 - 2315406
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattga 252  Q
    |||||||||||||||||||||||||||||||    
T  2315436 acttgtgtgacatagagttaggtgacattga 2315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 13043592 - 13043536
Alignment:
Q  228 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||  |||| ||||  ||||||||| ||||||||| |||||||||||    
T  13043592 gtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgctt 13043536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 27362 - 27277
Alignment:
Q  221 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 306  Q
    |||||| |||| |||||||| ||||||||||  || ||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  27362 tacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaag 27277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 27217 - 27271
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtca 276  Q
    ||||| ||||||||||||| |||||||||   || ||||||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtca 27271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 49700 - 49762
Alignment:
Q  222 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  49700 acttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgctt 49762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 49812 - 49753
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||    
T  49812 gacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtg 49753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 63786 - 63845
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  63786 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 63845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 63866 - 63836
Alignment:
Q  254 gacattggccaatcacaatgtcacaatgctt 284  Q
    |||||||||||||||||||||||||||||||    
T  63866 gacattggccaatcacaatgtcacaatgctt 63836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 19121 - 19181
Alignment:
Q  224 ttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 284  Q
    ||||||||||||||||| ||||||||||| || ||||  ||||||||||||||||||||||    
T  19121 ttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgctt 19181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 2265 - 2301
Alignment:
Q  277 caatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtg 2301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 2265 - 2301
Alignment:
Q  277 caatgcttatgtttttctctctttcacaagcattgtg 313  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtg 2301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University