View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19478_low_3 (Length: 385)
Name: NF19478_low_3
Description: NF19478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19478_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 367
Target Start/End: Original strand, 24384071 - 24384417
Alignment:
| Q |
21 |
ggtacaatatcaacataaaatttaatttatggatnnnnnnncataaatataatttaatagttaattaatttgtttcaaataaaatccaaccaataacctt |
120 |
Q |
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| T |
24384071 |
ggtacaatatcaacataaaatttaatttatggataaaaaaacataaatataatttaatagttaattaatttgtttcaaataaaatccaaccaataacctt |
24384170 |
T |
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| Q |
121 |
tcagaaaattccatcgaaaaataatatttgtttagggttcaagttgctatataactcaactttctgcatctgttagggttcaattttcaatcacagaata |
220 |
Q |
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| T |
24384171 |
ttagaaaattccatcgaaaaataatatttgtttagggttcaagttgctatataactcaactttctgcatctgttagggttcaattttcaatcacagaata |
24384270 |
T |
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| Q |
221 |
aaaacaaaacagttctgatgaatatccctccagctaagccactgcccaagtcccttgcgcaaccatcatctcgactggtagttctccccgatgatcttat |
320 |
Q |
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| T |
24384271 |
aaaacaaaacagttctgatgaatatccctccagctaagccactgcccaagtcccttgcgcaaccatcatctcgacaggtaattctccccgatgatcttat |
24384370 |
T |
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| Q |
321 |
ctttgaagtgttatcattccttaccgtgaatcatcttatgcgattta |
367 |
Q |
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| T |
24384371 |
ctttgaagtgttatcattccttaccgtgaatcatcttatgcgattta |
24384417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 161 - 365
Target Start/End: Original strand, 24390437 - 24390640
Alignment:
| Q |
161 |
aagttgctatataactcaactttctgcatctgttagggttcaattttcaatcacagaataaaaacaaaacagttctgatgaatatccctccagctaagcc |
260 |
Q |
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| T |
24390437 |
aagttgctatataactcaactttcggcatctgttaagcttcaaatttcaatcacagaagaaaaa-agtacagttctgatgaatatccctcccgctaagtc |
24390535 |
T |
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| Q |
261 |
actgcccaagtcccttgcgcaaccatcatctcgactggtagttctccccgatgatcttatctttgaagtgttatcattccttaccgtgaatcatcttatg |
360 |
Q |
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| T |
24390536 |
acgacgtcgatcccttgcgcaactgtcatctccaccggtaattctcccagatgaacttgtctgtgaagtgttatcattccttaccgtgaaacttcttatg |
24390635 |
T |
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| Q |
361 |
cgatt |
365 |
Q |
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| T |
24390636 |
cgatt |
24390640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 24390302 - 24390421
Alignment:
| Q |
62 |
cataaatataatttaatagttaattaatttgtttca------aataaaatccaaccaataacctttcagaaaattccatcgaaaaataatatttgtttag |
155 |
Q |
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| T |
24390302 |
cataaatttaatttaataattaattaatttgtttcactttcaaagcaaatccatccaattaccttttaaaaaattccatccgtaaataatattg--ttag |
24390399 |
T |
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| Q |
156 |
ggttcaagttgctatataactc |
177 |
Q |
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| T |
24390400 |
gtttcaagttgctatataactc |
24390421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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