View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19479_high_1 (Length: 393)
Name: NF19479_high_1
Description: NF19479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19479_high_1 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 16867287 - 16867014
Alignment:
| Q |
1 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16867287 |
catttagtttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaatcaaagcttc |
16867188 |
T |
|
| Q |
101 |
agccatttagtaggtatgagaacagaaatgaaaca-ggtttggtttggagatagactttgcttttggaagttgaatatgctttattatttgttttcaagg |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16867187 |
agccattttgtaggtatgagaacagaaatgaaacaaggtttggtttggagatagactttgcttttggaagttgaatatgctttgttatttgttttcaagg |
16867088 |
T |
|
| Q |
200 |
gttatttattaaatcggtggttgcagttctcatgcaacttgtcaaaaatatttagtgcatggcagcgaggaaaa |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16867087 |
gttatttattaactcggtggttgcagttctgatgcaacttgtcaaaaatatttagtgcatgacagtgaggaaaa |
16867014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 16658899 - 16659161
Alignment:
| Q |
12 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16658899 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggttttctatcacgattccaagtaaagcttcagccattttgt |
16658998 |
T |
|
| Q |
112 |
aggtatgagaacagaaatgaaac-aggtttggtttggagatagactttgcttttggaagttgaatatgctttattatttgttttcaagggttatttatta |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
16658999 |
aggtatgagaacagaaatgaaacaaggtttggtttggagatagactttgcttttggaagttgaatatgcgttattatttgttttcatgggctatttatta |
16659098 |
T |
|
| Q |
211 |
aatcggtggttgcagttctcatgcaacttgtcaaaaatatttagtgcatggcagcgaggaaaa |
273 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16659099 |
aatcggtggttgcagttctgatgcaacttgtcaaaaatatttagtgcatgacagtgaggaaaa |
16659161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17070385 - 17070492
Alignment:
| Q |
1 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
17070385 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaagtaaagcttc |
17070484 |
T |
|
| Q |
101 |
agccattt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
17070485 |
agccattt |
17070492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16798048 - 16798155
Alignment:
| Q |
1 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |
|
|
| T |
16798048 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaattaaagcgtc |
16798147 |
T |
|
| Q |
101 |
agccattt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
16798148 |
agccattt |
16798155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16839361 - 16839468
Alignment:
| Q |
1 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttc |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |
|
|
| T |
16839361 |
cattttgcttatgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaattaaagcgtc |
16839460 |
T |
|
| Q |
101 |
agccattt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
16839461 |
agccattt |
16839468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16988327 - 16988457
Alignment:
| Q |
1 |
catttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttc |
100 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||||||| || |
|
|
| T |
16988327 |
catttagtttctgggtcaatttttcaacacccaaaaaggatgcaagctcctctcgaacaaaatatccgaggttttcaatcacgattccaagtaaagcgtc |
16988426 |
T |
|
| Q |
101 |
agccatttagtaggtatgagaacagaaatgaa |
132 |
Q |
| |
|
||||||||| || ||| |||||||||||||| |
|
|
| T |
16988427 |
agccattta-cagatattagaacagaaatgaa |
16988457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 18872462 - 18872335
Alignment:
| Q |
5 |
tagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagcc |
104 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||| | || ||||||||||||||||||||| ||||||| ||||| ||||||||||| | |||||| |
|
|
| T |
18872462 |
tagcttttgtgtcaattcttcaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggttttgaatcacagttccaagtaaaacatcagcc |
18872363 |
T |
|
| Q |
105 |
atttagtaggtatgagaacagaaatgaa |
132 |
Q |
| |
|
|||| | ||||| ||||||||||||||| |
|
|
| T |
18872362 |
attttgcaggtacgagaacagaaatgaa |
18872335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 16781992 - 16782224
Alignment:
| Q |
12 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||| | ||||||||||| ||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
16781992 |
tgggtcaattctccaacacccaaataggtagcaagctcctcttgtacaaaagatccgaggttttgaatcacgataccaagtaaagcatcagccattt-tc |
16782090 |
T |
|
| Q |
112 |
aggtatgagaacagaaatgaaaca----ggtttggtttggagatagactttgcttttggaagttg-aatatgctttattatttgttttcaagggttattt |
206 |
Q |
| |
|
|| | |||||||||||||||| || |||| | || ||||| ||||||||| | ||||| || |||||| || |||||||||||||| | |||| | |
|
|
| T |
16782091 |
agatgtgagaacagaaatgaatcaaagttgtttagattagagat-gactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatct |
16782189 |
T |
|
| Q |
207 |
attaaatcggtggttgcagttctcatgcaacttgt |
241 |
Q |
| |
|
|||||||| |||| || |||| | |||||||||| |
|
|
| T |
16782190 |
attaaatcagtggatgtagtttttctgcaacttgt |
16782224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 16790261 - 16790357
Alignment:
| Q |
12 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccattt |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||| || ||| ||| ||||||| | |||||||||| |
|
|
| T |
16790261 |
tgggtcaattccccaacacccaaaaaggatgcaagctcctcttgaacaaaagatccgaggttttgaattacggttctaagtaaaacatcagccattt |
16790357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 18586970 - 18586853
Alignment:
| Q |
15 |
gtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagtagg |
114 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||||||||||||||| ||| ||| ||||| ||||||||||| | |||| ||||| | ||| |
|
|
| T |
18586970 |
gtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattttgcagg |
18586871 |
T |
|
| Q |
115 |
tatgagaacagaaatgaa |
132 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
18586870 |
taagtgaacagaaatgaa |
18586853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 18793889 - 18793772
Alignment:
| Q |
15 |
gtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagtagg |
114 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||||||||||||||| ||| ||| ||||| ||||||||||| | |||| ||||| | ||| |
|
|
| T |
18793889 |
gtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattttgcagg |
18793790 |
T |
|
| Q |
115 |
tatgagaacagaaatgaa |
132 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
18793789 |
taagtgaacagaaatgaa |
18793772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 18869985 - 18869882
Alignment:
| Q |
5 |
tagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagcc |
104 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||| | || ||||||||||||||| || || ||||||| ||||| ||||||||||| | |||||| |
|
|
| T |
18869985 |
tagcttttgtgtcaattcttcaacacccaaaaaggtcgaaagctcctctcgaacaaacgacccgaggttttgaatcacagttccaagtaaaacatcagcc |
18869886 |
T |
|
| Q |
105 |
attt |
108 |
Q |
| |
|
|||| |
|
|
| T |
18869885 |
attt |
18869882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 7052538 - 7052435
Alignment:
| Q |
5 |
tagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagcc |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||| ||||||||||| | |||||| |
|
|
| T |
7052538 |
tagcttctgggtcaattctcctacacccaaaaaggatgcaagctcctctcgaaaaaaagatccgaggttttcaatcacggttccaagtaaaacatcagcc |
7052439 |
T |
|
| Q |
105 |
attt |
108 |
Q |
| |
|
|||| |
|
|
| T |
7052438 |
attt |
7052435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 38938634 - 38938396
Alignment:
| Q |
5 |
tagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagcc |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| | ||| ||| |||| |||| |||| |||||||||| |||||| |
|
|
| T |
38938634 |
tagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtcagcc |
38938535 |
T |
|
| Q |
105 |
atttagtaggtatgagaacagaaatgaaac-aggtttggtttggagatagactttgcttttggaagttg-aatatgctttattatttgttttcaagggtt |
202 |
Q |
| |
|
|||| | |||||||||||||| |||||| | |||||||| |||||||| ||||||| | ||||| || |||||| | |||||| ||||||| | || |
|
|
| T |
38938534 |
attttgcaggtatgagaacag-aatgaatcaaggtttggattggagat--gctttgctctaggaagatgaaatatgtgtagttattttttttcaaagatt |
38938438 |
T |
|
| Q |
203 |
atttattaaatcggtggttgcagttctcatgcaacttgtcaa |
244 |
Q |
| |
|
| ||||||||| |||| || |||||| ||||||||||||| |
|
|
| T |
38938437 |
gtctattaaatcagtggatgtagttcttctgcaacttgtcaa |
38938396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 13378980 - 13379107
Alignment:
| Q |
5 |
tagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagcc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||| | | ||||||||||||||||||||| ||||| ||||||||||| | |||||| |
|
|
| T |
13378980 |
tagcttctgggtcaattctccaacacccaaaaaggttgaaagctcttgttgaacaaaagatccaaggttttgaatcacagttccaagtaaaacatcagcc |
13379079 |
T |
|
| Q |
105 |
atttagtaggtatgagaacagaaatgaa |
132 |
Q |
| |
|
|||| | |||||||| |||||||||||| |
|
|
| T |
13379080 |
attttgcaggtatgataacagaaatgaa |
13379107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 38371 - 38473
Alignment:
| Q |
6 |
agcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagcca |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || ||||| ||||||||| |||||||||| || |||| |
|
|
| T |
38371 |
agcttctcggtcaattctccaacacccaaaaaggatgcaagctcatctcgaacaaaatgtccgagattttcaatcacgattgcaagtaaagcgtcggcca |
38470 |
T |
|
| Q |
106 |
ttt |
108 |
Q |
| |
|
||| |
|
|
| T |
38471 |
ttt |
38473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 9394 - 9631
Alignment:
| Q |
12 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||| | ||||| ||||| ||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
9394 |
tgggtcaattctccaacacccaaataggtagcaagctcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccattt-tc |
9492 |
T |
|
| Q |
112 |
aggtatgagaacagaaatgaaaca----ggtttggtttggagatagactttgcttttggaagttg-aatatgctttattatttgttttcaagggttattt |
206 |
Q |
| |
|
|| | |||||||||||||||| || |||||| |||||||| || |||||| | ||||| || |||||| || |||||||||||||| | |||| | |
|
|
| T |
9493 |
agatgtgagaacagaaatgaatcaaagttgtttggattggagat-gattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatat |
9591 |
T |
|
| Q |
207 |
attaaatcggtggttgcagttctcatgcaacttgtcaaaa |
246 |
Q |
| |
|
|||||||| |||| || |||||| |||||| |||||||| |
|
|
| T |
9592 |
attaaatcagtggatgtagttcttctgcaacatgtcaaaa |
9631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 13742 - 13962
Alignment:
| Q |
12 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||| | ||||| ||||| ||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
13742 |
tgggtcaattctccaacacccaaataggtagcaaactcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccattt-tc |
13840 |
T |
|
| Q |
112 |
aggtatgagaacagaaatgaaaca----ggtttggtttggagatagactttgcttttggaagttg-aatatgctttattatttgttttcaagggttattt |
206 |
Q |
| |
|
|| | |||||||||||||||| || |||||| |||||||| || |||||| | ||||| || |||||| || |||||||||||||| | |||| | |
|
|
| T |
13841 |
agatgtgagaacagaaatgaatcaaagttgtttggattggagat-gattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatat |
13939 |
T |
|
| Q |
207 |
attaaatcggtggttgcagttct |
229 |
Q |
| |
|
|||||||| |||| || |||||| |
|
|
| T |
13940 |
attaaatcagtggatgtagttct |
13962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 10037 - 10156
Alignment:
| Q |
12 |
tgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||| | ||||| ||||| ||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
10037 |
tgggtcaattctccaacacccaaataggtagcaaactcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccattt-tc |
10135 |
T |
|
| Q |
112 |
aggtatgagaacagaaatgaa |
132 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
10136 |
agatatgagaacagaaatgaa |
10156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 10178 - 10251
Alignment:
| Q |
173 |
aatatgctttattatttgttttcaagggttatttattaaatcggtggttgcagttctcatgcaacttgtcaaaa |
246 |
Q |
| |
|
||||||| || |||||||||||||| | |||| ||||||||| |||| || |||||| |||||| |||||||| |
|
|
| T |
10178 |
aatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaa |
10251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 10252 - 10369
Alignment:
| Q |
15 |
gtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagtagg |
114 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||||||||||||||| ||| ||| ||||| ||||||||||| | |||| ||||| | ||| |
|
|
| T |
10252 |
gtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattttgcagg |
10351 |
T |
|
| Q |
115 |
tatgagaacagaaatgaa |
132 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
10352 |
taagtgaacagaaatgaa |
10369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 5572 - 5689
Alignment:
| Q |
15 |
gtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaagtaaagcttcagccatttagtagg |
114 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||||||||||||||| ||| ||| ||||| ||||||||||| | |||| ||||| | ||| |
|
|
| T |
5572 |
gtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattttgcagg |
5671 |
T |
|
| Q |
115 |
tatgagaacagaaatgaa |
132 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
5672 |
taagtgaacagaaatgaa |
5689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 11983232 - 11983113
Alignment:
| Q |
73 |
tttctatcacgattccaagtaaagcttcagccatttagtaggtatgagaacagaaatgaaac-aggtttggtttggagatagactttgcttttggaagtt |
171 |
Q |
| |
|
|||| ||||||||| |||| ||| |||||||||| | |||||| |||||||||||||| | ||||||| |||||||| ||||||||| | |||| | |
|
|
| T |
11983232 |
tttcaatcacgattttaagttaagtgtcagccattttgcaggtatcagaacagaaatgaatcgtggtttggattggagat-gactttgctctatgaagat |
11983134 |
T |
|
| Q |
172 |
g-aatatgctttattatttgt |
191 |
Q |
| |
|
| ||||||| ||||||||||| |
|
|
| T |
11983133 |
gaaatatgcgttattatttgt |
11983113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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