View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1947_low_1 (Length: 568)
Name: NF1947_low_1
Description: NF1947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1947_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 22 - 555
Target Start/End: Original strand, 9794759 - 9795292
Alignment:
| Q |
22 |
aaacaaaacccttgctaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9794759 |
aaacaaaacccttgacaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
9794858 |
T |
|
| Q |
122 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
9794859 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccagcacaa |
9794958 |
T |
|
| Q |
222 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9794959 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttg |
9795058 |
T |
|
| Q |
322 |
aataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtga |
421 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9795059 |
aataattctccaagattccttcacattcctctccaaagaccaaccataaagaagacttctataaacacaaggtagcactcctttaatcttgtctttgtga |
9795158 |
T |
|
| Q |
422 |
tgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
521 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795159 |
tgccaaactacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
9795258 |
T |
|
| Q |
522 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9795259 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
9795292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 22 - 555
Target Start/End: Complemental strand, 45146276 - 45145743
Alignment:
| Q |
22 |
aaacaaaacccttgctaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45146276 |
aaacaaaacccttgtcaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
45146177 |
T |
|
| Q |
122 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
45146176 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttcctgcacaa |
45146077 |
T |
|
| Q |
222 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45146076 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactatatctggggttaccccatttgtcttcatctcttg |
45145977 |
T |
|
| Q |
322 |
aataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtga |
421 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45145976 |
aataattctcctagattccttcacattcctctccatagaccaaccataaagaagacttctataaacacaaggtagctctcctttaatcttgtctttgtga |
45145877 |
T |
|
| Q |
422 |
tgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
521 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45145876 |
tgccaatctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
45145777 |
T |
|
| Q |
522 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45145776 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
45145743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University