View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1947_low_2 (Length: 517)
Name: NF1947_low_2
Description: NF1947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1947_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 54648501 - 54648253
Alignment:
| Q |
14 |
atcatcattcgagattatataacacgtagtattatcgcatgaaattcaaacgataaaaaacgagttgatattcttaaataattaaagaaaacttatttt- |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54648501 |
atcatcattcgagattatataacacgtagtattatcgcatgaaattcaaacgataaaaaacaagttgatattcttaaataattaaagaaaacttattttt |
54648402 |
T |
|
| Q |
113 |
-----------------caaacattataaattttctatatcattatctaaagtacatataagcaaaaagaaaattcaaacacatgaataagaaaaataat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54648401 |
aaaaaattaacatttttcaaacattataaattttctatatcattatctaaagtacatataagcaaaaagaaaaatcaaacacatgaataagaaaaataat |
54648302 |
T |
|
| Q |
196 |
gtataatgatttaaaatacatgaagacaacatgatttttaacattccct |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54648301 |
gtataatgatttaaaatacatgaagacaacatgatttttaacattccct |
54648253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 302 - 496
Target Start/End: Complemental strand, 54648175 - 54647992
Alignment:
| Q |
302 |
gattgactactgaagctcaaaaatatttatattacatttgtttcttaactaataatgcaacatgcatcatgcatcgattatcattttccatgtaatatta |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
54648175 |
gattgactactgaagctcaaaaatatttatattacatttgtttcttaactaataatgca-------tcatgcatcgattatcattttccatg----atta |
54648087 |
T |
|
| Q |
402 |
tatcattgtagcggtgtttacaacgattctagtatctgagtacagtataaaaatataatatttgggtgctagagtatgaaatccacagtagctca |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54648086 |
tatcattgtagcggtgtttacaacgattctagtatctgagtgcagtataaaaatataatatttgggtgctagagtatgaaatccacagtagctca |
54647992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University