View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1947_low_4 (Length: 238)
Name: NF1947_low_4
Description: NF1947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1947_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 44879575 - 44879787
Alignment:
| Q |
9 |
gaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaaca |
108 |
Q |
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| T |
44879575 |
gaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaaca |
44879674 |
T |
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| Q |
109 |
taattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttgg |
208 |
Q |
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| T |
44879675 |
taattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttgg |
44879774 |
T |
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| Q |
209 |
tgacgggccatat |
221 |
Q |
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| T |
44879775 |
tgacgggccatat |
44879787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 44848128 - 44848337
Alignment:
| Q |
9 |
gaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaaca |
108 |
Q |
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| T |
44848128 |
gaacaatacatgactcgtattcaaagtcaacaattgtatctaacatc---taatgcaagcacagcagaatatatgttgtaatgtatttatctgttcaaca |
44848224 |
T |
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| Q |
109 |
taattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttgg |
208 |
Q |
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| T |
44848225 |
tgattaacctccatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttgg |
44848324 |
T |
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| Q |
209 |
tgacgggccatat |
221 |
Q |
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| T |
44848325 |
tgacgggccatat |
44848337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 44861784 - 44861997
Alignment:
| Q |
9 |
gaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaaca |
108 |
Q |
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| T |
44861784 |
gaacaatacatgactagtattcaatttcaacaattgtatctaacatccaataat-caaacacaacagaataaatgttttagtgtatttatctcttcaaca |
44861882 |
T |
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| Q |
109 |
taattaagctctatgt--gcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtctt |
206 |
Q |
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| T |
44861883 |
cgagtaaactctatatatgcattttatgcaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtctt |
44861982 |
T |
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| Q |
207 |
ggtgacgggccatat |
221 |
Q |
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| T |
44861983 |
ggtgacgggccatat |
44861997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 44836269 - 44836366
Alignment:
| Q |
124 |
tgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatat |
221 |
Q |
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| T |
44836269 |
tgcattttatataggttgttttgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatat |
44836366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 44897150 - 44897311
Alignment:
| Q |
60 |
aatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggttt |
159 |
Q |
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| T |
44897150 |
aatgcaaacactgcataatagatgttttagtgtatttttctttttaatatgagtaagctctatacacatttaatgtaggttgtgctgacatcactgattt |
44897249 |
T |
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| Q |
160 |
atgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatat |
221 |
Q |
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| T |
44897250 |
atgagaagcaacaaaaattgagaatcatgatgaaaatgcatggtcttggtgatggaccatat |
44897311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 12927594 - 12927505
Alignment:
| Q |
132 |
atgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatat |
221 |
Q |
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| T |
12927594 |
atgtaggttgtcctcacatcattagtttacgagaagcaacaaaatttgagaatcatgatgaaaatgcatggtctcggtgatgggccatat |
12927505 |
T |
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