View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1947_low_6 (Length: 227)
Name: NF1947_low_6
Description: NF1947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1947_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 16659090 - 16658937
Alignment:
| Q |
56 |
atcattaagaagcatataaacatgatgagagtagtcagctcttcgagaagtctagctctactgcggtttcaaccacataacaaatcaaagcacaaatatt |
155 |
Q |
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| T |
16659090 |
atcattaagaagcatataaacatgatgagagtagtcagctcttcaagaagtctagctctactgcggtttcaaccacataacaaatcaaagcacaaatatt |
16658991 |
T |
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| Q |
156 |
atttgatcaactaaagcaccnnnnnnngattaagtggaacacaagagccggaga |
209 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
16658990 |
atttgatcaactaaagcaccaaaaaaagatcaagtggaacacaagagccggaga |
16658937 |
T |
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