View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19480_high_2 (Length: 442)
Name: NF19480_high_2
Description: NF19480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19480_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 42207766 - 42207317
Alignment:
| Q |
1 |
attgaatgttcttgaataatcaagattcaagaatgaaaaagagcattcatcaacttaaatacggtggaatcaaaattccaaaattaccgtagcgaacaaa |
100 |
Q |
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| T |
42207766 |
attgaatgttcttgaataatcaagattcaagaatgaaaaagagcattcatcaacttaaatacggtggaatcaaaattccaaaattaccgtagcgaacaaa |
42207667 |
T |
|
| Q |
101 |
aaagtttatatttcaaaacattagcataaaatagagtcgtggg-----gcacggttcttttctcaaatcagaagattgagttttgttgaaaaatcaagaa |
195 |
Q |
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| T |
42207666 |
aaagtttatatttcaaaacattagcataaaatagagtcgtgggactgtgcacggttcttttctcaaatctgaagattgaattttgttgaaaaatcaagaa |
42207567 |
T |
|
| Q |
196 |
tgagaaatatgggcatatcccaacatgtatgaatgaaaatatgttggaattaaaattcaaaaattaccgtagcaaacgaaaaagatgactgagggacc-- |
293 |
Q |
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| T |
42207566 |
tgag-aatatgggcatatcccaacatgtatgaatgcaaatatgttggaattaaaattcaaaaattaccgtagcaaacgaaaaagatgactgagggaccca |
42207468 |
T |
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| Q |
294 |
--------------------caacattcgtatagttttgttcttttcttgaagaaaaaataatgaaacctcaataacagaaggatctaaaatgcagtctc |
373 |
Q |
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| T |
42207467 |
acattcgtaaaagtttcgatcaacattcgtatagttttgttcttttcttgtagaaaaaataatgaaacctcaataacagaaggatctaaaatgcagtctc |
42207368 |
T |
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| Q |
374 |
ttttagaagttgaacagatgtcacacatgttagtttatgcatcaccaaacc |
424 |
Q |
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| T |
42207367 |
ttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaacc |
42207317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 42206601 - 42206525
Alignment:
| Q |
268 |
caaacgaaaaagatgactgagggacccaacattcgt-atagttttgttcttttcttgaagaaaaaataatgaaacct |
343 |
Q |
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| T |
42206601 |
caaacgaaaaagatgatcgagggaccaaacattcgtaatcgtatggtttctttcttaaagaaaaaataatgaaacct |
42206525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 6918331 - 6918295
Alignment:
| Q |
388 |
cagatgtcacacatgttagtttatgcatcaccaaacc |
424 |
Q |
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| T |
6918331 |
cagatgtcacacatgctagtttatccatcaccaaacc |
6918295 |
T |
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