View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19480_high_3 (Length: 421)
Name: NF19480_high_3
Description: NF19480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19480_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 90 - 406
Target Start/End: Complemental strand, 22956926 - 22956610
Alignment:
| Q |
90 |
gaatgatttttaatacttaattaattaagtaggtagttcacctaaccacgcatatgcggggaatggatttgctcaacaatacgtcaataaaacttgcaaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22956926 |
gaatgatttttaatacttaattaattaagtaggtagttcacctaaccacgcatatgcggggaatggatttgctcaacaatacgtcaataaaacttgcaaa |
22956827 |
T |
|
| Q |
190 |
cctttaatgcgtaagtaaataaaacttgatttttgtgtgaaaaagtactccataagtcaataaaacttgggcaaggctcaagaggcctaaactataagct |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22956826 |
cctttaatgcgtaagtaaataaaacttgatttttgtttgaaaaagtactccataagtcaataaaacttgggcaaggcccaagaggcctaaactataagct |
22956727 |
T |
|
| Q |
290 |
gctattttagggacatttgctaacttcaagaaaattcctataggttgttagaaaaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacga |
389 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22956726 |
gctattttagggacatttgctaacttcaacaaaattcctataggttgttaggaaaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacga |
22956627 |
T |
|
| Q |
390 |
atccactacaaccatag |
406 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
22956626 |
atccactgcagccatag |
22956610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 50558486 - 50558418
Alignment:
| Q |
344 |
aggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccatagaattat |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |
|
|
| T |
50558486 |
aggaaaaagtttaatggtacgatagttgagcgacgaaaagcaacgaatccactgcagccataggattat |
50558418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 17724975 - 17725040
Alignment:
| Q |
341 |
aaaaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccatag |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
17724975 |
aaaaggaaaaagcttaatggtacaatagttgaaagacgaaaagcaacgaatccactgcagccatag |
17725040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 1933262 - 1933328
Alignment:
| Q |
346 |
gaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccatagaattat |
412 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||| || ||||||||||||| ||||| ||||| |
|
|
| T |
1933262 |
gaaaaagcttaatggtacgatagctaggcgaagaaaatcatcgaatccactacagtcataggattat |
1933328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 24053468 - 24053542
Alignment:
| Q |
343 |
aaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccatagaattatctacc |
417 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||||||||||||||||||| || || |||||| ||||| |||| |
|
|
| T |
24053468 |
aaggaaaaagtttaatggtacaatagttgagtgacgaaaagcaacgaatcctctgcagccataggattatatacc |
24053542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University