View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19480_low_1 (Length: 911)
Name: NF19480_low_1
Description: NF19480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19480_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 670; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 19 - 898
Target Start/End: Original strand, 26343128 - 26344012
Alignment:
| Q |
19 |
ttggatgtcttcctcaagccactactcaaacctcatttcaaatttgaaatggtacatttaatgaccttgtagctctccacaacaatctatt--------- |
109 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26343128 |
ttggatgtcttcctcaagccaccgctcaaacctcatttcagagttgcaatagtacatttaatgaccttgtagctctccacaacaatctattgaaccaatc |
26343227 |
T |
|
| Q |
110 |
----acaaagatgaaccaacaatccaag-----gatcgcaccacattcacaatcctcagcattttcgatagtttcaaggtagtgttgaatcaccat-caa |
199 |
Q |
| |
|
|||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||| |
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|
| T |
26343228 |
tattacaaggatgaaccaacaatccaagccaaggatcacaacacattcacaatcctcagcattttcgatagtttcaagtcagtgtggaatcacccttcaa |
26343327 |
T |
|
| Q |
200 |
accataatattagggaaagtttgaagccatgatgcgtcggagttagcgatgagtatacttgtggaagtgtagattctgaacatacttctaataaatattt |
299 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26343328 |
acc---------------gtttgaagccatgttgcgtcggagttagcgatgagtatacttgtggaagtgtagattttgaacatacttctaataaatattt |
26343412 |
T |
|
| Q |
300 |
ggtttgtgaaaaccttgaatcaactttcttttgggatcagttacactcaacacaagcaggttggaatgttgtgtataatgagttggagaagaaaggcttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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|
| T |
26343413 |
ggtttgtgaaaaccttgaatcaactttcttttgggatcagttacacccaacacaagcaggttggaatgctgtgtataatgagttggagaagaaaggcctt |
26343512 |
T |
|
| Q |
400 |
catcaaattttatactagagctatgtatctttgtgtgtcacatatttgcattgttttgtttcttgtttaataaggcaccctatcttttcattaatttgta |
499 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26343513 |
catcaaagtttatactagagctatgtatctttgtgtgtcacatatttgcattgttttgtttcttgtttaataaggcaccccatcttttcattaatttgta |
26343612 |
T |
|
| Q |
500 |
aatttatcgttaaatttggctttgtttgtaagttgtaactattgcatgtgatttcatttcaaagggtgcaatgtgcaaattgattattattttttgttgt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26343613 |
aatttatcgttaaatttggctttgtttgtaagttgtaactattgcatgtgatttcatttcaaagggtgcaatgtgcaaattgattattattttttgttgt |
26343712 |
T |
|
| Q |
600 |
tgatattaatgttgctcaatactaaataa-ttgcttgaagcaaaattgtttataatgatgattatcaagcggaaaaaggaagactagatatacaaattgg |
698 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26343713 |
tgatattaatgttgctcaatactaaataatttgcttgaagcaaaattgtttataatgatgattatcaagcggaaaaaggaagactggatatacaaattgg |
26343812 |
T |
|
| Q |
699 |
tccatgaaatacgtaggtcattttcataatagacaaacatcatgtctctcaatttgcaccgggttattaattttcttttcagttaattatttcgttgaag |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26343813 |
tccatgaaatacgtaggtcattttcataatagacaaacatcatgtctctcaatttgcaccgggttattaattttcttttcagttaattatttcgttgaag |
26343912 |
T |
|
| Q |
799 |
agtatgagctggacactataatgcatatgtgacatttcaacatacacaccacatcattgtcatgtcatagtgacagtttagctggaaatatttgtggttc |
898 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
26343913 |
aatatgagctggacactataatgcatatgtgacatttcaacatacacaccacatcattgccatgtcatagtgacaatttagctgaaaatatttgtggttc |
26344012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Original strand, 26336766 - 26337377
Alignment:
| Q |
19 |
ttggatgtcttcctcaagccactactcaaacctcatttcaaatttgaaatggtacatttaatgaccttgtagctctccacaacaatcta----------- |
107 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
26336766 |
ttggttgtcttcctcaagccactgctcaaaactcatttcaaagttgcaatagtacatttaatgaccttgtagctctccgcaacaatctaatgaaacaatc |
26336865 |
T |
|
| Q |
108 |
--ttacaaagatgaaccaacaatccaaggatcgcaccacattcacaatcctcagcattttcgatagtttcaaggtagtgttgaatcaccat-caaaccat |
204 |
Q |
| |
|
|||||||| |||||||| || |||| |||| |||||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||| |||| |
|
|
| T |
26336866 |
tattacaaagttgaaccaagaaaccaaagatcacaccacattcacaatcctaggccttttcgatagtttcaggtcggtgttgaatcacccttcaagccat |
26336965 |
T |
|
| Q |
205 |
aatattagggaaagtttgaagccatgatgcgtcggagttagcgatgagtatacttgtggaagtgtagattctgaacatacttctaataaatatttggttt |
304 |
Q |
| |
|
|| |||| |||| ||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26336966 |
aacattaaggaacgtttgaagccatgttgcatcggagtaagcgatgagtatacttatggaagtgtagattctgaacatactactaataaatatttggttt |
26337065 |
T |
|
| Q |
305 |
gtgaaaaccttgaatcaactttcttttgggatcagttacactcaacacaagcaggttggaatgttgtgtataatgagttggagaagaaaggctttcatca |
404 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26337066 |
gtgaaaatcttgaatcaactttcttttgggatcaattacacccaacacaagcaggttggaatgatgtgtataatgagttggagaagagaggtcttcatca |
26337165 |
T |
|
| Q |
405 |
aattttatactagagctatgtatctttgtgtgtcacatatttgcattgttttgtttcttgtttaataaggcaccctatcttttcattaatttgtaaattt |
504 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26337166 |
aattttatactagagctgtgtatgtttgtgtt--atctatttacattgttttgtttcttgtttaataaggcaccccatcttttcaataatttgtaaattt |
26337263 |
T |
|
| Q |
505 |
atcgttaaatttggctttgtttgtaagttgtaactattgcatgtgatttcatttcaaagggtgcaatgtgcaaattgattattattttttgttgttgata |
604 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||||| |||||||||| |
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|
| T |
26337264 |
atccttaaatttggctt-gtttataagttgtaactattgcatgtgatttcattttaaagggtgcaatgtgaatagtgattattatttttcgttgttgata |
26337362 |
T |
|
| Q |
605 |
ttaatgttgctcaat |
619 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26337363 |
ttaatgttgctcaat |
26337377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 26329453 - 26329848
Alignment:
| Q |
19 |
ttggatgtcttcctcaagccactactcaaacctcatttcaaatttgaaatggtacatttaatgaccttgtagctctccacaa-------------caatc |
105 |
Q |
| |
|
|||| |||||||||||||| ||| || |||||||||| |||| ||| ||| |||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
26329453 |
ttggttgtcttcctcaagcaactgctgaaacctcattccaaagttgcaatagtacatttaacgacctcgtagctctccacaataacctattgaaccaatc |
26329552 |
T |
|
| Q |
106 |
tattacaaagatgaaccaacaatccaaggatcgcaccacattcacaatcctcagcattttcgatagtttcaaggtagtgttgaatcaccat-caaaccat |
204 |
Q |
| |
|
| |||||||| | || ||| || |||| |||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||| | | | |||| |
|
|
| T |
26329553 |
tgttacaaagttaaatcaagaaaccaatgatcacaccacattcacaattctagacattttcgatagtttcaagtcagtgttgaatcacccttctagccat |
26329652 |
T |
|
| Q |
205 |
aatattagggaaagtttgaagccatgatgcgtcggagttagcgatgagtatacttgtggaagtgtagattctgaacat------acttctaataaatatt |
298 |
Q |
| |
|
|| |||| |||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||| | || || | ||| ||||||| |
|
|
| T |
26329653 |
aacattaaggaacgtttgaaaccatgttgcgtcggagtaagcagtgagtataagtgtggaagtgtagattataaaaatttaaataaggttaagaaatatt |
26329752 |
T |
|
| Q |
299 |
tggtttgtgaaaaccttgaatcaactttcttttgggatcagttacactcaacacaagcaggttggaatgttgtgtataatgagttggagaagaaag |
394 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||||| |
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|
| T |
26329753 |
tggtttgtgaaaatcctgaatcaactttcttttgggatcagttgcacccaacacaggccggttggaatgctgtgtataatgagttggagaagaaag |
26329848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 292 - 605
Target Start/End: Original strand, 26323629 - 26323930
Alignment:
| Q |
292 |
aaatatttggtttgtgaaaaccttgaatcaactttcttttgggatcagttacactcaacacaagcaggttggaatgttgtgtataatgagttggagaaga |
391 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||||| || ||| |||||||||| || ||||||| ||| ||||||||||||||||||| |
|
|
| T |
26323629 |
aaatatttggtttgtgaaaatccagaatcaagtttcttttgggatggattgcacccaacacaagctggatggaatgctgtatataatgagttggagaaga |
26323728 |
T |
|
| Q |
392 |
aaggctttcatcaaattttatactagagctatgtatctttgtgtgtcacatatttgcattgttttgtttcttgtttaataaggcaccctatcttttcatt |
491 |
Q |
| |
|
|||| |||| | ||||| ||||||||||||||||||| ||||||| ||||||||| |||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
26323729 |
aaggtcttcacaatattttgtactagagctatgtatctt--tgtgtcatttatttgcatcattttgtttgttgtctaataaagcaccat-tctattcatg |
26323825 |
T |
|
| Q |
492 |
aatttgtaaatttatcgttaaatttggctttgtttgtaagttgtaactattgcatgtgatttcatttcaaagggtgcaatgtgcaaattgattattattt |
591 |
Q |
| |
|
||||||| || ||||| ||||| | ||| || ||||| | |||| ||||| ||||| ||||||||| ||||||||| |||| ||||||||||| |
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|
| T |
26323826 |
aatttgttaagttatccttaaactcggc-ttctttgt--------attattacatgtcatttcctttcaaaggatgcaatgtggaaatcgattattattt |
26323916 |
T |
|
| Q |
592 |
tttgttgttgatat |
605 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26323917 |
tttgttgttgatat |
26323930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 26323345 - 26323435
Alignment:
| Q |
19 |
ttggatgtcttcctcaagccactactcaaacctcatttcaaatttgaaatggtacatttaatgaccttgtagctctccacaacaatctatt |
109 |
Q |
| |
|
||||||||||||||||| ||||| || || |||| || ||| ||| ||| |||||||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
26323345 |
ttggatgtcttcctcaaaccactgctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaacctatt |
26323435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 708
Target Start/End: Original strand, 26337375 - 26337440
Alignment:
| Q |
642 |
aattgtttataatgatgattatcaagcggaaaaaggaagactagatatacaaattggtccatgaaat |
708 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||| |
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|
| T |
26337375 |
aattgttgataatgatgattatcaaaag-aaaaaggaagaatagataaccaaattggtccatgaaat |
26337440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 741 - 828
Target Start/End: Original strand, 26337518 - 26337601
Alignment:
| Q |
741 |
tgtctctcaatttgcaccgggttattaattttcttttcagttaattatttcgttgaagagtatgagctggacactataatgcatatgt |
828 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||| || ||||||||| |||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
26337518 |
tgtctcttaatttgcaccgg---attaattctcttttg-gtcaattatttctttgatgagtatgagctggacaatataatgtatatgt |
26337601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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