View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19480_low_4 (Length: 335)

Name: NF19480_low_4
Description: NF19480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19480_low_4
NF19480_low_4
[»] chr6 (17 HSPs)
chr6 (10-322)||(4575483-4575795)
chr6 (12-319)||(4561692-4561999)
chr6 (112-311)||(4481995-4482194)
chr6 (33-319)||(3173054-3173340)
chr6 (92-319)||(4488988-4489215)
chr6 (92-319)||(4503084-4503311)
chr6 (115-255)||(4471050-4471190)
chr6 (102-249)||(4623427-4623574)
chr6 (90-255)||(4627258-4627423)
chr6 (89-255)||(4298353-4298519)
chr6 (127-320)||(4265847-4266040)
chr6 (112-249)||(4462340-4462477)
chr6 (123-255)||(4259031-4259163)
chr6 (111-194)||(4255555-4255638)
chr6 (177-249)||(4581209-4581281)
chr6 (177-248)||(4586827-4586898)
chr6 (183-248)||(4599364-4599429)
[»] scaffold0477 (1 HSPs)
scaffold0477 (90-250)||(3382-3542)
[»] scaffold0288 (1 HSPs)
scaffold0288 (100-319)||(2245-2464)
[»] chr5 (1 HSPs)
chr5 (109-320)||(24104218-24104433)
[»] scaffold0475 (1 HSPs)
scaffold0475 (162-319)||(2001-2158)
[»] chr8 (1 HSPs)
chr8 (90-315)||(20862599-20862824)
[»] chr7 (1 HSPs)
chr7 (127-232)||(3087890-3087995)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 4575483 - 4575795
Alignment:
Q  10 agaagaaaaacggaacaaaaatgattacctttgaatggtacttgactattctgatacattttagtactgagcaaacaagccaagaaataacatgcactac 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4575483 agaagaaaaagggaacaaaaatgattacctttgaatggtacttgactattcagatacattttaggactgagcaaacaagacaagaaataacatgcactac 4575582  T
Q  110 atggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4575583 atggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataag 4575682  T
Q  210 accagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgactt 309  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4575683 accagcagtggcagagtcttgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgactt 4575782  T
Q  310 acatcaccattac 322  Q
    |||||||||||||    
T  4575783 acatcaccattac 4575795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 4561692 - 4561999
Alignment:
Q  12 aagaaaaacggaacaaaaatgattacctttgaatggtacttgactattctgatacattttagtactgagcaaacaagccaagaaataacatgcactacat 111  Q
    |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |    
T  4561692 aagaaaaagggaacagaaatgattacctttgaatggtagttgactattctgatacattttaggactgagcaaacaagccaagaaataacatgctctactt 4561791  T
Q  112 ggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagac 211  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4561792 ggggaaaaaagaacaactgggagtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagac 4561891  T
Q  212 cagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgacttac 311  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |     
T  4561892 cagcagtggcagagtcttgaagtttagcaagaagttcatcaaagaagtggtgaaagttcgttatgattgattcaccaagagagtgtaggtcttgactaat 4561991  T
Q  312 atcaccat 319  Q
    ||||||||    
T  4561992 atcaccat 4561999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 112 - 311
Target Start/End: Original strand, 4481995 - 4482194
Alignment:
Q  112 ggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagac 211  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  4481995 ggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataatac 4482094  T
Q  212 cagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgacttac 311  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |  |||||||  || ||||||||||||    
T  4482095 cagcagtggcagattcatgaagtttagccagaaattcatcaaagaagtggcgaaagttcgtcatgattgattgagtaagagagaataagtcttgacttac 4482194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 33 - 319
Target Start/End: Original strand, 3173054 - 3173340
Alignment:
Q  33 attacctttgaatggtacttgactattctgatacattttagtactgagcaaacaagccaagaaataacatgcactacatggggaaaaaagaacaattggg 132  Q
    ||||||||||| ||||| | ||| ||||||| ||| ||||| | |  | |||| |||||||||  ||||||||||||| || ||||| ||||||||||||    
T  3173054 attacctttgagtggtagtagaccattctgaaacaatttaggaatatgaaaaccagccaagaagaaacatgcactacacggcgaaaatagaacaattggg 3173153  T
Q  133 agggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagaccagcagtggcagaatcatgaa 232  Q
    || ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||| ||| | || |||||||||||||| |||||||| ||||    
T  3173154 agagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagcagttgcagaatcgtgaa 3173253  T
Q  233 gtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccat 319  Q
    ||||||||| |||||||  ||| ||| |  |||||||| | |||||||||  || ||||| | ||| ||||||||| ||||||||||    
T  3173254 gtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccat 3173340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 319
Target Start/End: Complemental strand, 4489215 - 4488988
Alignment:
Q  92 agaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagca 191  Q
    |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  4489215 agaagtaagatgcactacatggggaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagca 4489116  T
Q  192 agtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaaga 291  Q
    ||| ||| | ||||||||||||||||| ||||| |||| |||||||||||||| | || ||||||| ||| |||| ||  | |||||||||  || ||||    
T  4489115 agtaactggagggataagaccagcagtagcagagtcattaagtttagcaagaaatacaccaaagaattggtgaaaattgttcatgattgatagacaaaga 4489016  T
Q  292 gagtgtaggtcttgacttacatcaccat 319  Q
    | | |||  |||||||| ||||| ||||    
T  4489015 gcgcgtaaatcttgactaacatcgccat 4488988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 319
Target Start/End: Complemental strand, 4503311 - 4503084
Alignment:
Q  92 agaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagca 191  Q
    |||| ||| ||||||||||||||||||  |||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  4503311 agaagtaagatgcactacatggggaaacgagaacaattgggagtgtatgttcttcagcagcatatactggaaatggcatgttgcaatcagaaactaagca 4503212  T
Q  192 agtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaaga 291  Q
    ||| ||| | ||||||||||||||||||||||| |||| ||||||| |||||| |||| ||||||| ||| |||| ||| |  ||||||||  |   |||    
T  4503211 agtaactggagggataagaccagcagtggcagagtcattaagtttaacaagaaattcaccaaagaattggtgaaaattcttcttgattgatagatagaga 4503112  T
Q  292 gagtgtaggtcttgacttacatcaccat 319  Q
    | | ||| ||||||||| ||||||||||    
T  4503111 gcgcgtaagtcttgactaacatcaccat 4503084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 4471050 - 4471190
Alignment:
Q  115 gaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagaccag 214  Q
    ||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| || |||||| ||| | |||||||||||||    
T  4471050 gaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagaccag 4471149  T
Q  215 cagtggcagaatcatgaagtttagcaagaagttcatcaaag 255  Q
    ||||||||||  ||| |||| ||| |||||||||| |||||    
T  4471150 cagtggcagaggcatcaagtctagtaagaagttcaccaaag 4471190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 4623427 - 4623574
Alignment:
Q  102 tgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgg 201  Q
    |||||||  |||||| || | |||||||||||| ||||| ||||||||||| | || |||||||| |||||| ||||| |||||||||||||| ||| |     
T  4623427 tgcactagctggggagaagaaaacaattgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggt 4623526  T
Q  202 gggataagaccagcagtggcagaatcatgaagtttagcaagaagttca 249  Q
    || | |||||||||||||||||| ||||||||||| ||||||||||||    
T  4623527 ggaacaagaccagcagtggcagagtcatgaagttttgcaagaagttca 4623574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 4627258 - 4627423
Alignment:
Q  90 caagaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaag 189  Q
    ||||||| ||||||||||| | |  ||||| ||| |||||||||| ||||||||||||||||| | ||  ||||||| |||  | ||||| |||||||||    
T  4627258 caagaaagaacatgcactagaagtagaaaagagagcaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaag 4627357  T
Q  190 caagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaag 255  Q
    ||||| ||| | |  | ||||||||||||||| || |||||||||||||||||||||||| |||||    
T  4627358 caagtaactggtgcaacaagaccagcagtggctgagtcatgaagtttagcaagaagttcaccaaag 4627423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 255
Target Start/End: Complemental strand, 4298519 - 4298353
Alignment:
Q  89 ccaagaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaa 188  Q
    |||||||  |||||||||||  |||  |||| |||| ||||||||| ||||||||||| ||||| | ||  ||||||| |||  |  |||||| ||||||    
T  4298519 ccaagaaggaacatgcactagctggacaaaagagaataattgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaa 4298420  T
Q  189 gcaagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaag 255  Q
    |||||| ||| | || | |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  4298419 gcaagtaactggtggtacaagaccagcagtggcagaatcacgaagtttagcaagaagttcaccaaag 4298353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 4266040 - 4265847
Alignment:
Q  127 attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagaccagcagtggcagaat 226  Q
    |||||||| ||||||||||| |||||||||| |||||| |||||||| ||||| ||||| |||||||| | | | || |||| |||| || ||||||| |    
T  4266040 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt 4265941  T
Q  227 catgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccatt 320  Q
     ||||||| ||| ||||||||||||||||   ||  | |||||||| ||||||||||   |||||| || || ||||||| |  ||||||||||    
T  4265940 gatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccatt 4265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 4462340 - 4462477
Alignment:
Q  112 ggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagac 211  Q
    |||||||| ||||| |||||||| ||| ||| |||||| ||||| ||||||||||||||||| ||||||||||||| |||||| ||  | |||||||||     
T  4462340 ggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagat 4462439  T
Q  212 cagcagtggcagaatcatgaagtttagcaagaagttca 249  Q
    | |||||||||||  ||| |||| | | ||||||||||    
T  4462440 cggcagtggcagaggcatcaagtcttgtaagaagttca 4462477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 4259163 - 4259031
Alignment:
Q  123 aacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagaccagcagtggca 222  Q
    |||||||||||| ||||| ||||||||||| | ||   |||||| |||||| |||||||||||||||||||| ||  | || | || ||||| ||||||     
T  4259163 aacaattgggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggct 4259064  T
Q  223 gaatcatgaagtttagcaagaagttcatcaaag 255  Q
    || || ||||||||||||||||||||| |||||    
T  4259063 gagtcttgaagtttagcaagaagttcaccaaag 4259031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 4255638 - 4255555
Alignment:
Q  111 tggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagt 194  Q
    ||||||||  |||||||||||||| ||||| ||||||||||| | ||  ||||||| |||||| ||||||||||||||||||||    
T  4255638 tggggaaaggagaacaattgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagt 4255555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 4581209 - 4581281
Alignment:
Q  177 atcagaaactaagcaagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttca 249  Q
    ||||||||||| |||||| ||| | |||| |||||||| ||||||||| |||| |||| ||||||||||||||    
T  4581209 atcagaaactatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttca 4581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 4586827 - 4586898
Alignment:
Q  177 atcagaaactaagcaagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttc 248  Q
    |||||||||||  ||||||||| | |||||||||||||  || ||||| |||| |||| |||||||||||||    
T  4586827 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttc 4586898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 4599364 - 4599429
Alignment:
Q  183 aactaagcaagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttc 248  Q
    |||||||||||| ||| | ||||||||||||||||| | ||| ||||  ||| |||||||||||||    
T  4599364 aactaagcaagtaactggagggataagaccagcagtagaagactcatagagtctagcaagaagttc 4599429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 3542 - 3382
Alignment:
Q  90 caagaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaag 189  Q
    ||||||| |||||||||| |  | |||||| |||||||||||||| ||||||||||||||||| | ||  |||||||||||||| |||||||  |||| |    
T  3542 caagaaagaacatgcactgccggtggaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatg 3443  T
Q  190 caagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcat 250  Q
    ||||| ||||| || | |||||||||||||||||| |||||||||||| ||||||||||||    
T  3442 caagtaacttgtggaacaagaccagcagtggcagagtcatgaagtttaacaagaagttcat 3382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 319
Target Start/End: Complemental strand, 2464 - 2245
Alignment:
Q  100 catgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactt 199  Q
    |||||||||| ||| ||| ||||||  |||||||| |||| |||||||||||| | ||  ||||||| |||||| |||||||||||||||| ||| |||     
T  2464 catgcactacctggcgaataaagaaggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactg 2365  T
Q  200 gggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtag 299  Q
    | ||||||||||||| | ||||||| || | |||| |||||||||||||   |||||||||  | |||||  || ||||||||| || ||||||| |||     
T  2364 gagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctgattgatttacaaagagagagtat 2265  T
Q  300 gtcttgacttacatcaccat 319  Q
    ||||||||| |||| |||||    
T  2264 gtcttgactaacattaccat 2245  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 24104218 - 24104433
Alignment:
Q  109 catggggaaaaaagaacaattgggagggcatgttcttcagcagcatcta----ctgtaaatggcatgtagcaatcagaaactaagcaagtgacttggggg 204  Q
    ||||| ||||| | || ||||||||| |||||||||||| ||||||| |    |||||||||||||||| ||||| |||||||||||||| | | | ||     
T  24104218 catggagaaaagaaaagaattgggagtgcatgttcttcaacagcatcgatcaactgtaaatggcatgtaacaatccgaaactaagcaagtaattggtgga 24104317  T
Q  205 ataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtctt 304  Q
    |||| |||| || ||||||| | ||||||| ||| ||||||||||||||||   ||  | |||||||| ||||||||||   |||||| || || |||||    
T  24104318 ataacaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggctgaaggaagttcgtcatgattgattgcacaagagggtatatgtctt 24104417  T
Q  305 gacttacatcaccatt 320  Q
    || | |||||||||||    
T  24104418 gagtaacatcaccatt 24104433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 319
Target Start/End: Original strand, 2001 - 2158
Alignment:
Q  162 aaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtgg 261  Q
    ||||| |||||| |||||||||||||||| ||| ||| | ||||||||||||| | ||||||| || | |||| |||||||||||||   |||||||||     
T  2001 aaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtga 2100  T
Q  262 cgaaagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccat 319  Q
     | |||||  || ||||||||| || ||||||| ||| ||||||||| |||| |||||    
T  2101 aggaagttttttctgattgatttacaaagagagagtatgtcttgactaacattaccat 2158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 315
Target Start/End: Complemental strand, 20862824 - 20862599
Alignment:
Q  90 caagaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaag 189  Q
    ||||||| |||| |||||| |||||  ||  |||||||||||||| ||| ||||||||||| | | ||  |||| || |||| | | |||||||||||||    
T  20862824 caagaaagaacaagcactagatgggataaggagaacaattgggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaag 20862725  T
Q  190 caagtgacttgggggataagaccagcagtggcagaatcatgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaa 289  Q
    ||||| ||  | || ||||||||||   ||| ||| ||||||||||| ||||||||||||  |||   || |   ||||||||| ||||| |||||| ||    
T  20862724 caagtaacaggaggtataagaccagatttggaagagtcatgaagtttggcaagaagttcacgaaaactgtcgatgaagttcgttctgattaattcacgaa 20862625  T
Q  290 gagagtgtaggtcttgacttacatca 315  Q
    |||| || | ||||||||| ||||||    
T  20862624 gagattggaagtcttgactaacatca 20862599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 3087890 - 3087995
Alignment:
Q  127 attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgacttgggggataagaccagcagtggcagaat 226  Q
    |||||||| ||||  ||||||||| | | ||  ||||||||||||||  ||||||  ||||||||||| ||| | || ||||||||||||  |||||| |    
T  3087890 attgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagt 3087989  T
Q  227 catgaa 232  Q
    ||||||    
T  3087990 catgaa 3087995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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