View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19481_low_1 (Length: 744)
Name: NF19481_low_1
Description: NF19481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19481_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 5e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 186 - 522
Target Start/End: Complemental strand, 5432817 - 5432460
Alignment:
| Q |
186 |
tttgatatgctaaaatgtaagtatttaatataacaatttaagataaaacaacacaacataaaaaatgataaacttttataatattgaacaannnnnnnn- |
284 |
Q |
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| T |
5432817 |
tttgatatgcaaaaatgtaagtatttaatataacaatttaagataaaacaacacaacataagaaataataaacttttataatatcgaacatttttttttt |
5432718 |
T |
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| Q |
285 |
gtcttatacgaattttaatggacaaaattttattttg-tattttagataatttgtagctcgaacgaaaagttttgtcgtggtttaaagacta-------- |
375 |
Q |
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| T |
5432717 |
gtcttgtacgaattttgatgaacaaaattttattttggtattttaaatcatctgtagatcggacaaaaaattttgtagtggtttaaagactacatttctt |
5432618 |
T |
|
| Q |
376 |
------------tgttatgtttctattaactcaaatagagtcttaaatgtgatttggtaattagggtaaaagtgaagaaaagaatgagtgaaggtggtgg |
463 |
Q |
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| T |
5432617 |
tctgttttcgtctgttatgtt-ctattaactcaaatagagtcttaaatgtgatttggtaattagggtaaaagtgaagaaaagaatgagtgaaggtggtgg |
5432519 |
T |
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| Q |
464 |
tagtgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgtacta |
522 |
Q |
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| T |
5432518 |
tagtgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgtacta |
5432460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 589 - 730
Target Start/End: Complemental strand, 5432384 - 5432243
Alignment:
| Q |
589 |
taacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgcc |
688 |
Q |
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| T |
5432384 |
taacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgcc |
5432285 |
T |
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| Q |
689 |
gccgcctaaggaacccttcattaagcgctacaagtttgtttg |
730 |
Q |
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| T |
5432284 |
gctgcctaaggaacccttcattaagcgctacaagttcgtttg |
5432243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 5433918 - 5433740
Alignment:
| Q |
4 |
ggtagattattctaagaccaagttaagttcaaagttagcactaaagttctttgtgtagtgagaataattgactcgaatacactataattcattaaagaca |
103 |
Q |
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|||| ||| |||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
5433918 |
ggtacattgttctgagaccacgttaagttcaaagttagcactaaagttcttcatgtagtgagaataattgaattgaatacactataattcattaaagaca |
5433819 |
T |
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| Q |
104 |
tttttggtccctacagtaaatacatttttattcataannnnnnnaagagacatttttactcattcttgatagttagggt |
182 |
Q |
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| T |
5433818 |
tttttggtccctacagtaaatacatttttattcatatattttttaagagatatttttactcattcttgatagttagggt |
5433740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 589 - 724
Target Start/End: Complemental strand, 5438868 - 5438739
Alignment:
| Q |
589 |
taacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgcc |
688 |
Q |
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|||||||||| ||||||||||||| ||| || |||||||||||| |||||||||| | |||| |||||| | ||||||||||||||| || ||||| |
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| T |
5438868 |
taacagcgcaactgaagcaatttcaagggca---gaaatcgaacgagttctcttcgcagtcgtcgatgggggcacaaacggctcctcct---ccgccgcc |
5438775 |
T |
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| Q |
689 |
gccgcctaaggaacccttcattaagcgctacaagtt |
724 |
Q |
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| T |
5438774 |
gctacctaaggaaccctttattaagcactacaagtt |
5438739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 424 - 519
Target Start/End: Complemental strand, 5439029 - 5438940
Alignment:
| Q |
424 |
ttagggtaaaagtgaagaaaagaatgagtgaaggtggtggtagtgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgta |
519 |
Q |
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| T |
5439029 |
ttagggtaaaagtgaataaaagaatgagtgaaggtg------gtgctgatcacggttcttctccaaagctttataatcacaaacccaaaatatgta |
5438940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 21100114 - 21100182
Alignment:
| Q |
174 |
agttagggtacatttgatatgctaaaatgtaagtatttaatataacaatttaagataaaacaacacaac |
242 |
Q |
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| T |
21100114 |
agttagggtgtatttgatctactaaaaagtaagtattgaatataacagtataagatataacaacacaac |
21100182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 29992799 - 29992745
Alignment:
| Q |
285 |
gtcttatacgaattttaatggacaaaattttattttgtattttagataatttgta |
339 |
Q |
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| T |
29992799 |
gtcttatacgatttttggtggacaaaaaattattttgtattttagataacttgta |
29992745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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