View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19481_low_10 (Length: 227)
Name: NF19481_low_10
Description: NF19481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19481_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39182543 - 39182318
Alignment:
| Q |
1 |
aaaaatcttggaggttagactccacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaatgacttacagccaaag |
100 |
Q |
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| T |
39182543 |
aaaaatcttggaggttagacttcacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaa-gacttacagccaaag |
39182445 |
T |
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| Q |
101 |
ctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatattttcttttcttttcttgcagccggcgaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |
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| T |
39182444 |
ctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatatttttttttttttttttgcagccggcgaagt |
39182345 |
T |
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| Q |
201 |
tgaatattactactgatctgatcatgt |
227 |
Q |
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| T |
39182344 |
tgaatattactactgatctgatcatgt |
39182318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2103096 - 2103243
Alignment:
| Q |
1 |
aaaaatcttggaggttagactccacaagactttt--gagttcttataggtttcaattctttgattttctagtagatgaaatagcaatgacttacagccaa |
98 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2103096 |
aaaaatcttggaggttagacttcacaagacttttctgagttcttattggtttcaattctttgatttcctagtagatgaaatagcaatgacttacagccaa |
2103195 |
T |
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| Q |
99 |
agctgctttaaacaaacatctttcacttgtgtttggttgcaatggata |
146 |
Q |
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| T |
2103196 |
agttgctttaaaaaaacatctttcacttgtgtttggttgcaatggata |
2103243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 2103302 - 2103380
Alignment:
| Q |
146 |
acacaagttttaatgcatcctatattttcttttcttttcttgcagccggcgaagttgaatattactactgatctgatcatgt |
227 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2103302 |
acacaagttttaatgcattctatatttt-ttttctttt--tgcagccggcgaagttgaatattactactgataagatcatgt |
2103380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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