View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19481_low_3 (Length: 468)
Name: NF19481_low_3
Description: NF19481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19481_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 10233788 - 10233967
Alignment:
| Q |
1 |
gaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaac |
100 |
Q |
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| T |
10233788 |
gaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaacc |
10233887 |
T |
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| Q |
101 |
ttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgttctgaacaactcca |
180 |
Q |
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| T |
10233888 |
ttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgtcctgaacaactcca |
10233967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 249 - 436
Target Start/End: Original strand, 10234037 - 10234226
Alignment:
| Q |
249 |
tgtgagacatgaatataacta--gtgagtgaacttactaactaataggtcaggtcgccatttgccggaaactatttcagcaaaaggtttatacttgatgt |
346 |
Q |
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| T |
10234037 |
tgtgagacatgaatataactttggtgagtgaacttactaactaataggtcaggtcgccatttgctggaaactatttcagcaaaaggcttatacttgatgt |
10234136 |
T |
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| Q |
347 |
gcgtattagggatgtcattgaggttgacatcaacaacagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
436 |
Q |
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| T |
10234137 |
gcgtattagagatgtcattgaggttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
10234226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 8336672 - 8336851
Alignment:
| Q |
1 |
gaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaac |
100 |
Q |
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| T |
8336672 |
gaatcataacacgaaaggaatttaagttggttgaaaactgtaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaacc |
8336771 |
T |
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| Q |
101 |
ttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgttctgaacaactcca |
180 |
Q |
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| T |
8336772 |
ttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgtcctgaacaactcca |
8336851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 249 - 436
Target Start/End: Original strand, 8336921 - 8337110
Alignment:
| Q |
249 |
tgtgagacatgaatataacta--gtgagtgaacttactaactaataggtcaggtcgccatttgccggaaactatttcagcaaaaggtttatacttgatgt |
346 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |
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| T |
8336921 |
tgtgagtcatgaatataactttggtgagtgaacttactaaataataggtcaggtcgccattttccgaaaactatttcagcaaaaggcttatacttgatgt |
8337020 |
T |
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| Q |
347 |
gcgtattagggatgtcattgaggttgacatcaacaacagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
436 |
Q |
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| T |
8337021 |
gcgtattagggatgtcattgaggttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
8337110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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