View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19481_low_8 (Length: 251)
Name: NF19481_low_8
Description: NF19481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19481_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 39181940 - 39182170
Alignment:
| Q |
16 |
aagcaaactaaaagaatatttcnnnnnnntgttctttttagggtcatgactcatgacattaacaccatgcatccagtcatgttggccatgtcatagcaca |
115 |
Q |
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| T |
39181940 |
aagcaaactaaaagaatatttcaaaaaac-gttctttttagggtcatgactcatgacattaacaccat----ccagtcatgttggccatgtcatagcaca |
39182034 |
T |
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| Q |
116 |
agatattacaagataaaaagaaccaaatgaagacagaagatagaaattcagaaacattcactaagcataaaatccaaacatcaaaacagcaccattttat |
215 |
Q |
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| T |
39182035 |
agatattacaagataaaaagaaccaaatgaagacagaagatagaaattcagaaacattcactaagcataaaatccaaacatcaaaacagcaccattttaa |
39182134 |
T |
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| Q |
216 |
gtctcttaagcaatggtgagatatacacatcatggc |
251 |
Q |
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| T |
39182135 |
gtctcttaagcaatggtgagatatacacatcatggc |
39182170 |
T |
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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 2103705 - 2103540
Alignment:
| Q |
85 |
catccagtcatgttggccatgtcatagcacaagatattacaagataaaaagaaccaaatgaagacagaagatagaaattcagaaacattca--------c |
176 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
2103705 |
catccaatcatgttcgccatggcatagcacaagatattatataatgaaaagaaccaaatgaagacagaagataagaattcagaaacattcacatggcgtc |
2103606 |
T |
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| Q |
177 |
taagcataaaatccaaacatcaaaacagcaccattttatgtctcttaagcaatggtgagatataca |
242 |
Q |
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| T |
2103605 |
taagcataaaatccaaacatcaaaacaacaccattttaagcctcttaagcaatggtgggatataca |
2103540 |
T |
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