View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19481_low_9 (Length: 237)
Name: NF19481_low_9
Description: NF19481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19481_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 3377446 - 3377278
Alignment:
| Q |
52 |
attaatactaccatcagatcatagaaatgcttcacctcatatgtggataatttttcagacgattgaggctgactaatggtggcgcttgatatgactccat |
151 |
Q |
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| T |
3377446 |
attaatactactatcagattatagaaatgcttcacctcatatgttgacaatttttccgccgattgaggctgactaatggtggcacttgatatgactccat |
3377347 |
T |
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| Q |
152 |
ttgcagatagaatgcatatagcttctggtccttgctgacaaaatgacattactttcatagcaatattct |
220 |
Q |
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| T |
3377346 |
ttgcagatagaatgcatatagcttctggtccttgctgacaaaatgacattactttcatagcaatattct |
3377278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 3372566 - 3372420
Alignment:
| Q |
74 |
agaaatgcttcacctcatatgtggataatttttcagacgattgaggctgactaatggtggcgcttgatatgactccatttgcagatagaatgcatatagc |
173 |
Q |
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| T |
3372566 |
agaaatgctgcacctcatatgtggataatttttcagacgagtgaggctgactaatggttgcgcttgatatgactccaattgcagatagaatgcatatagc |
3372467 |
T |
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| Q |
174 |
ttctggtccttgctgacaaaatgacattactttcatagcaatattct |
220 |
Q |
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| T |
3372466 |
ttctggttctttccgacacgatgacattaccttcatagtaacattct |
3372420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 3402742 - 3402611
Alignment:
| Q |
80 |
gcttcacctcatatgtggataatttttcagacgattgaggctgactaatggtggcgcttgatatgactccatttgcagatagaatgcatatagcttctgg |
179 |
Q |
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| T |
3402742 |
gcttcacctcatatgtgaataatgttcgagacgattgaggtcgactaatgacgacttttgatatgactccatttacatatagaatgcatatagcttctgg |
3402643 |
T |
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| Q |
180 |
tccttgctgacaaaatgacattactttcatag |
211 |
Q |
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| T |
3402642 |
tccttgctgacaaaatgacattatcttcatag |
3402611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 3374640 - 3374542
Alignment:
| Q |
76 |
aaatgcttcacctcatatgtggataatttttcagacgattgaggctgactaatggtggcgcttgatatgactccatttgcagatagaatgcatatagct |
174 |
Q |
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| T |
3374640 |
aaatgcttcacctcatatgtgtagaatgttccagatgcttgaggccgattaatggtggctcttgatgcgactccatttgcagataggatgcttatagct |
3374542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 42205997 - 42205929
Alignment:
| Q |
141 |
tatgactccatttgcagatagaatgcatatagcttctggtccttgctgacaaaatgacattactttcat |
209 |
Q |
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| T |
42205997 |
tatgacaccatttgctgaaagaatgcatacagctcgaggtccttgctgagaaaatgaaattaccttcat |
42205929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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