View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_high_11 (Length: 296)
Name: NF19482_high_11
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 44186834 - 44186578
Alignment:
| Q |
23 |
acttggcctgcatcttctccattgattcactcttaca---cactaggcatagtaatctccatgtcatcgactgttgtgttcacctcctcactcaagtcaa |
119 |
Q |
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| T |
44186834 |
acttggcctccatcttctccattgattcactcttacagtacactcggcatagtaatctccatgtcatcgactgttgtgttcacctcctcactcaagtcaa |
44186735 |
T |
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| Q |
120 |
agtcatgttgttggcaaatgcccttgtggtatcaccgtaatcattttgattgagaataagcaacattttactatgttttgtggcatataagaagaagnnn |
219 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186734 |
agtcatgttgttggcaaatgtccttgtggtatcaccgtaatcattttgattgagaataagcaacattttactatgttttgtggcatataagaagaag-aa |
44186636 |
T |
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| Q |
220 |
nnnnnngatgataatgaatattttcatctgtcaagcagtaatagaaaaaacttaaaaa |
277 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
44186635 |
aaaaaagatgataatgaatattttcatctgtcaagcaataatagaaaaaactaaaaaa |
44186578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 8015093 - 8014960
Alignment:
| Q |
23 |
acttggcctgcatcttctccattgattcactcttacacactaggcatagtaatctccatgtcatcgactgttgtgttcacctcctcactcaagtcaaagt |
122 |
Q |
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|||||||||||||||||||||| ||| ||||| || ||||| ||||||||||||| | | ||||||||||||||||| |||| | || |
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| T |
8015093 |
acttggcctgcatcttctccatggatacactcgta-------ggcattataatctccatgtctcccattgttgtgttcacctccttactcga-----agc |
8015006 |
T |
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| Q |
123 |
catgttgttggcaaatgcccttgtggtatcaccgtaatcattttga |
168 |
Q |
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||||||||||||||||| ||||||| ||||||| ||||||| |||| |
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| T |
8015005 |
catgttgttggcaaatgtccttgtgatatcaccataatcatcttga |
8014960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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