View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_high_4 (Length: 525)
Name: NF19482_high_4
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 4614788 - 4614296
Alignment:
| Q |
1 |
taataatgccaccaaattgatattttggttggaatgtagagaaaatacatcaacgtttgtttatagattggttttaatataactgtgtgcgtataaagaa |
100 |
Q |
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| T |
4614788 |
taataatgccaccaaattgatattttggttggaatgtagagaaaatacatcaacgtttgtttata----------------actgtgtgcgtataaagaa |
4614705 |
T |
|
| Q |
101 |
atggattaatagagcatcaatctcaatatctcaaccaagtgacgaaagcagcagcacaattaggccactagaccaaacaaattggactccattttcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4614704 |
atggattaatagagcatcaatctcaatatctcaaccaagtgacgaaagcagcagcacaattaggccactagaccaaacaaattggactccattttcttga |
4614605 |
T |
|
| Q |
201 |
actaagtgttgattcagactatcgtataaaatactaaccctctttcttaatctttgaatcacaagttcaggactaacataatcattgtttaaggaagcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4614604 |
actaagtgttgattcagactatcgtataaaatactaaccctctttcttaatctttgaatcacaagttcaggactaacataatcattgtttaaggaagcac |
4614505 |
T |
|
| Q |
301 |
ttaatagattaatccattttggcctcttctcaacgtctctttctgtctgttcaaacattgtgaatattgagtaattaactcaaggaaagaggaaaaagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4614504 |
ttaatagattaatccattttggcctcttctcaacgtctctttctgtctgttcaaacattgagaatattgagtaattaactcaaggaaagaggaaaaagaa |
4614405 |
T |
|
| Q |
401 |
gttaatatcaaagttcatggaaacaagtacttttcaccaaggcttatcacgaagatatggataatcttaaaatttactcgagtaaaagaactactattac |
500 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4614404 |
gttaaaatcaaagttcatggaaacaagtacttttcaccaaggcttatcacgaagatatggataatcttaaaatttactcgagtaaaagaactactattac |
4614305 |
T |
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