View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19482_high_6 (Length: 395)
Name: NF19482_high_6
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 44041385 - 44041026
Alignment:
| Q |
16 |
atatcgaggattatgacgctagccttgagcccttgaccataagaattacagttgaggattttcggttaagatacctttaaagttccatcgagggatgcac |
115 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44041385 |
atatcgaggatcatcacgctagccttgagcccttgaccatacgaattacagttgaggattttcggttaagatacctttaaagttccatcgagggatgcac |
44041286 |
T |
|
| Q |
116 |
tggcaaaggtagatggatccttgggattaaatgccacttgcatcacataatgtgagttcccttcaaaagtctcatcacaagaccaacctttcttccaatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44041285 |
tggcaaaggtagatggatccttgggattaaatgccacttgcataacataatgtgagttcccttcaaaagtctcatcacaagaccaaccttttttccaatt |
44041186 |
T |
|
| Q |
216 |
ccacaacttcaagacttgatcatcagaagccgataccacatatggtagaaatggatgaacagccaaactcctaatataatctttatgtgcctcaaattct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44041185 |
ccacaacttcaagacttgatcatcagaagccgataccacatatggtagaaatggatgaacagccaaactcctaatataatctttatgtgcctcaaattct |
44041086 |
T |
|
| Q |
316 |
attatcttttccattttctcataattgtagacgcgaatatatttgtcatcagttgccgcg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44041085 |
attatcttttccattttctcataattgtagacgcgaatatatttgtcatcagttgccgcg |
44041026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University