View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19482_high_7 (Length: 380)

Name: NF19482_high_7
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19482_high_7
NF19482_high_7
[»] chr4 (1 HSPs)
chr4 (75-365)||(43241585-43241875)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 75 - 365
Target Start/End: Complemental strand, 43241875 - 43241585
Alignment:
Q  75 tgataaatacattatacatttcataaaaacaaaatgatttttgttcaacaactttccttataacaatagttatggtggatttaaccacaacgatacaatg 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43241875 tgataaatacattatacattttataaaaacaaaatgatttttgcgcgacaactttccttataacaatagttatggtggatttaaccacaactatacaatg 43241776  T
Q  175 attttacatttttcaattctgtaatggtttctcatcaaatgtatatgtaagatcaattccatttcttactgaaattaaggcatatagttgattgaatagc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  43241775 attttacatttttcaattctgtaatggtttctcatcaaatgtatatgtaagatcaattccatttcttactgaaattaaggcatatagttgatgaaatagc 43241676  T
Q  275 aatccacaatcatacatcggcaaagaactgatacttttgaacattgttgattatgaaccgaagagctgaaattgtggttgctattgtaagt 365  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43241675 aatccacaatcatacatcggcaaagaattgatacttttgaacgttgttgattatgaaccgaagagctgaaattgtggttgctattgtaagt 43241585  T

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