View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_high_9 (Length: 313)
Name: NF19482_high_9
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 39977477 - 39977656
Alignment:
| Q |
1 |
ttgttgttgatttttgagaaagcaaaaagtaaatagaaagattaaggataggaattggaaatgtgtgtgtctgtctgtggtgaagagcaaagtgtacaga |
100 |
Q |
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| T |
39977477 |
ttgttgttgatttttgagaaagcaaaaagtaaatagaaagattaaggataggaattggaaatgtgtgtgtctgtctgtggtgaagagcaaagtgtacaga |
39977576 |
T |
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| Q |
101 |
tagtaatatttatagagtcattaaaggagtgattgtagcatttggttaaccacacagttggcattaacttcacctagcac |
180 |
Q |
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| T |
39977577 |
tagtaatatttatagagtcattaaaggagtgattgtagcatttggttaaccacacagttggcattaacttcacctagcac |
39977656 |
T |
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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 39977683 - 39977774
Alignment:
| Q |
207 |
ggtattagaacttgaaaaaatttgttttatgctaatgcttccaacatgttgccagatagtaataatgtttgatagagtaggtaggttaaaat |
298 |
Q |
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| T |
39977683 |
ggtattagaacttgaaaaaatttgttttatgctaatgcttccaacatgttgccagatagtaataatgtttgatagagtaggtaggttaaaat |
39977774 |
T |
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