View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_1 (Length: 703)
Name: NF19482_low_1
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Complemental strand, 44187518 - 44186832
Alignment:
| Q |
8 |
gtccaagaatatgtctagagtcgtagagtgtataattttggaatacatccaactttgttcaactttctacttgcagcaaatgattttgatgaagaacgta |
107 |
Q |
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|||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44187518 |
gtccaaaaaaatgtctagagtcgtagggtgtataattttggaatacatcccactttgttgaactttctacttgcagcaaatgattttgatgaagaacgta |
44187419 |
T |
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| Q |
108 |
gtagcaccaaaaaagcaaagatgcttcatgtttaaacgcaattggatttggaacgtcacatctttctcgtattttatttacaagcctatgcagctatcta |
207 |
Q |
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| T |
44187418 |
gtagcaccaaaaaagcaaagatgcttcatgtttaaacgcaattggatttggaacgtcacatctttctcgtattttatttacaagcctatgcagctatcta |
44187319 |
T |
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| Q |
208 |
tacattgcttgggatttatatgccttgcccaattatgttaataatcagctcatagtttataccaagattttttcatcgtgaaattggcctcaaaacgctt |
307 |
Q |
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| T |
44187318 |
tacattgcttgggatttatatgccttgcccaattatgttaataatcagctcatagtttataccaaggttttttcatcgtgaaattggcctcaaaacactt |
44187219 |
T |
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| Q |
308 |
atgtgatggacaaaagtattaacggcaaccaataattaaatataggatcaggatttggtgcggtaaaaaagcacacaggttggtgtgtaatatatcaaac |
407 |
Q |
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| T |
44187218 |
atgtgatggacaaaagtatcaacggcaaccaataactaaatataggatcagaatttggtgcggtaaaaaagcatacagtttggtgtgtaatatatcaaac |
44187119 |
T |
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| Q |
408 |
aatactagtatatagatttaatctagcaccctatatgtaaaacaaatccacggtcaaagcaaaacaacaagataaaaataataggtttgattttataaat |
507 |
Q |
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| T |
44187118 |
aatactagtatatagatttaatctagcaccctatatgtaaaacaaatccacggtcaaagcaaaacaacaagataaaaataataggtttgatttt---aat |
44187022 |
T |
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| Q |
508 |
ttagtgaatgttaacacatcctctaactctttacggtgcaaaagatgagcaaatcaatatagttaatacatgaatgataaactggtggtaggtttaattt |
607 |
Q |
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| T |
44187021 |
ttagtgaatgttaatacatc------ctctttacggtgcaaaagatgagcaaatcaataaagttaatacatgaatgataaactggtggtaggtttaattt |
44186928 |
T |
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| Q |
608 |
taatttagtgatatgttgcaataaattttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatcatcaact |
703 |
Q |
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| T |
44186927 |
taatttagtgatatgttgcaataaattttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatcatcaact |
44186832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 27646930 - 27646983
Alignment:
| Q |
352 |
ggatcaggatttggtgcggtaaaaaagcacacaggttggtg-tgtaatatatca |
404 |
Q |
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| T |
27646930 |
ggatcaggatttggtgctgtaaaaaagcacacagtttggtgctgtaataaatca |
27646983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 697
Target Start/End: Complemental strand, 45872409 - 45872346
Alignment:
| Q |
634 |
tttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatca |
697 |
Q |
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|||| ||||||||| | |||||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
45872409 |
tttccaagcttctttcttactaaagtgttggtaatcttcgtcaatcctattctcatcatcatca |
45872346 |
T |
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