View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_11 (Length: 309)
Name: NF19482_low_11
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 5901475 - 5901741
Alignment:
| Q |
27 |
tacatagataccttttttcatactcaataactatagacacctaaatattgtatagacaacagtttacactatctatagataaattatgtacagagctgat |
126 |
Q |
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| T |
5901475 |
tacatagatcccttttttcatacgcaataactatagacacctaaatattgtatagacaacagtttacactatctatagataaattatgtacagagctgat |
5901574 |
T |
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| Q |
127 |
ctat-atctgctcnnnnnnnnnnnnnnnnngctgatctgttatacgaacccatatgtaaactacacattttatagtcagaactgaaaagaaattgatcta |
225 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5901575 |
ctattatctgctcaaaaaataaaaaataaagctgatctgttatacgaacccatatgtaaactacacattttatagtcagaactgaaaagaaattgttcta |
5901674 |
T |
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| Q |
226 |
tatgcccttcatatttgctcaatagctcttcaataaaccggaatgtatcttttgatgacacgaacat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5901675 |
tatgcccttcatatttgctcaatagctcttcaataaaccggaatgtatcttttgatgacacgaacat |
5901741 |
T |
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